Directory

.
├── data  
|    ├── tpm_sample_genes.csv
|    ├── mm10 / genes / genes.gtf
|    └── loom
|         ├── E11A_all.loom  
|         ├── E11Y_all.loom  
|         ├── E12F_all.loom  
|         └── E14F_all.loom  
├── Fig5A                
|    └── fig5a.ipynb
├── Fig5B                
|    └── fig5b.ipynb
├── TableS1    
|    ├── deseq_right_vs_left.R
|    ├── deseq_right_end_vs_left_end.R
|    ├── x_coordinate_right_vs_left.csv
|    └── x_coordinate_right_end_vs_left_end.csv
├── poetry.lock  
├── pyproject.toml  
└── README.md  

Setup

pyenv install (if needed)

$ git clone git://github.com/yyuu/pyenv.git ~/.pyenv  
$ echo 'export PYENV_ROOT="$HOME/.pyenv"' >> ~/.bash_profile  
$ echo 'export PATH="$PYENV_ROOT/bin:$PATH"' >> ~/.bash_profile  
$ echo 'eval "$(pyenv init --path)"' >> ~/.bash_profile  
$ source ~/.bash_profile  

pyenv setup

$ pyenv install 3.7.0  
$ cd ~/hsc_independent #project directory name  
$ pyenv local 3.7.0  

poetry install

$ pip3 install poetry==1.1.8  
$ poetry config virtualenvs.in-project true

package install

$ cd ~/hsc_independent #project directory name 
$ poetry install  
$ poetry run jupyter lab  

jupyter remote access (if needed)

https://jupyter-notebook.readthedocs.io/en/stable/public_server.html

Failing to install python-igraph (if needed)

Setup your computer environment for package compiling

(Ubuntu)

$ sudo apt update gcc build-essential python3-dev libxslt-dev libffi-dev libssl-dev libxml2 libxml2-dev zlib1g-dev