[FEATURE] Allow a higher false positive rate on merged bins. #484
Workflow file for this run
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| # SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: Linux | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| types: | |
| - unlabeled | |
| workflow_dispatch: | |
| concurrency: | |
| group: misc-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: ${{ github.event_name != 'push' }} | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "Snippet gcc11" | |
| compiler: "gcc-11" | |
| build: snippet | |
| build_type: Release | |
| use_include_dependencies: "OFF" | |
| - name: "Performance gcc11" | |
| compiler: "gcc-11" | |
| build: performance | |
| build_type: Release | |
| use_include_dependencies: "OFF" | |
| - name: "Header gcc13" | |
| compiler: "gcc-13" | |
| build: header | |
| build_type: Release | |
| use_include_dependencies: "OFF" | |
| - name: "Header gcc11" | |
| compiler: "gcc-11" | |
| build: header | |
| build_type: Release | |
| use_include_dependencies: "OFF" | |
| - name: "Non-cyclic tests" | |
| compiler: "gcc-12" | |
| build: unit | |
| build_type: Debug | |
| use_include_dependencies: "ON" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: Setup toolchain | |
| uses: seqan/actions/setup-toolchain@main | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| ccache_size: 75M | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.16.9 | |
| - name: Configure tests | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DHIBF_NATIVE_BUILD=OFF \ | |
| -DHIBF_VERBOSE_TESTS=OFF \ | |
| -DHIBF_BENCHMARK_MIN_TIME=0.01 \ | |
| -DHIBF_USE_INCLUDE_DEPENDENCIES="${{ matrix.use_include_dependencies }}" | |
| case "${{ matrix.build }}" in | |
| unit) make -j2 gtest_build;; | |
| snippet) make -j2 gtest_build;; | |
| performance) make -j2 gbenchmark_build;; | |
| header) make -j2 gtest_build gbenchmark_build;; | |
| esac | |
| - name: Check cyclic includes | |
| if: matrix.use_include_dependencies == 'ON' | |
| run: | | |
| cd build | |
| make -k -j2 all_dependencies | |
| cmake . | |
| - name: Build tests | |
| if: matrix.use_include_dependencies == 'OFF' | |
| run: | | |
| ccache -z | |
| cd build | |
| make -k -j2 | |
| ccache -sv | |
| - name: Run tests | |
| if: matrix.use_include_dependencies == 'OFF' | |
| run: | | |
| cd build | |
| ctest . -j2 --output-on-failure |