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Merge pull request #201 from eseiler/package_test
[INFRA] Use containers for CI
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -26,90 +26,68 @@ defaults: | |
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| jobs: | ||
| build: | ||
| name: ${{ matrix.name }} | ||
| runs-on: ubuntu-22.04 | ||
| timeout-minutes: 120 | ||
| runs-on: ubuntu-latest | ||
| name: ${{ matrix.compiler }} | ||
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | ||
| strategy: | ||
| fail-fast: true | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - name: "gcc13" | ||
| compiler: "gcc-13" | ||
| build: coverage | ||
| build_type: Coverage | ||
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||
| compiler: ["gcc-14"] | ||
| container: | ||
| image: ghcr.io/seqan/${{ matrix.compiler }} | ||
| volumes: | ||
| - /home/runner:/home/runner | ||
| steps: | ||
| # How many commits do we need to fetch to also fetch the branch point? | ||
| - name: Get fetch depth | ||
| id: fetch_depth | ||
| run: echo "depth=$(( ${{ github.event.pull_request.commits }} + 2 ))" >> $GITHUB_OUTPUT | ||
|
|
||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: ${{ steps.fetch_depth.outputs.depth }} | ||
| submodules: false | ||
| fetch-depth: 0 | ||
|
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||
| - name: Setup toolchain | ||
| uses: seqan/actions/setup-toolchain@main | ||
| - name: Load ccache | ||
| uses: actions/cache@v4 | ||
| with: | ||
| compiler: ${{ matrix.compiler }} | ||
| ccache_size: 525M | ||
|
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||
| - name: Install CMake | ||
| uses: seqan/actions/setup-cmake@main | ||
| with: | ||
| cmake: 3.18.6 | ||
|
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||
| - name: Install gcovr | ||
| run: | | ||
| sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/${CC/gcc/gcov} 100 | ||
| pip install gcovr==6.0 | ||
| path: /home/runner/.ccache | ||
| save-always: true | ||
| key: ccache-${{ runner.os }}-${{ github.workflow }}-${{ matrix.compiler }}-${{ github.ref }} | ||
|
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||
| - name: Configure tests | ||
| run: | | ||
| mkdir build | ||
| cd build | ||
| cmake ../test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | ||
| -DHIBF_VERBOSE_TESTS=OFF | ||
| make -j2 gtest_main | ||
| cmake ../test/coverage -DCMAKE_BUILD_TYPE=Coverage | ||
| make -j gtest_main | ||
| - name: Build tests | ||
| env: | ||
| CCACHE_IGNOREOPTIONS: "-fprofile-abs-path" | ||
| working-directory: build | ||
| run: | | ||
| ccache -z | ||
| cd build | ||
| make -k -j2 | ||
| make -k -j | ||
| ccache -sv | ||
| - name: Run tests | ||
| run: | | ||
| cd build | ||
| ctest . -j2 --output-on-failure | ||
| working-directory: build | ||
| run: ctest . -j --output-on-failure | ||
|
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||
| - name: Generate coverage report | ||
| run: | | ||
| gcovr --gcov-executable ${{ github.workspace }}/.github/workflows/scripts/gcov.sh \ | ||
| --root ${{ github.workspace }}/test/coverage \ | ||
| ${{ github.workspace }}/build \ | ||
| --filter ${{ github.workspace }}/include \ | ||
| --filter ${{ github.workspace }}/test/include \ | ||
| --filter ${{ github.workspace }}/src \ | ||
| --exclude ${{ github.workspace }}/include/hibf/contrib \ | ||
| --exclude ${{ github.workspace }}/test/include/hibf/test/iterator_test_template.hpp \ | ||
| gcovr --root ${GITHUB_WORKSPACE}/test/coverage \ | ||
| ${GITHUB_WORKSPACE}/build \ | ||
| --filter ${GITHUB_WORKSPACE}/include \ | ||
| --filter ${GITHUB_WORKSPACE}/test/include \ | ||
| --filter ${GITHUB_WORKSPACE}/src \ | ||
| --exclude ${GITHUB_WORKSPACE}/include/hibf/contrib \ | ||
| --exclude ${GITHUB_WORKSPACE}/test/include/hibf/test/iterator_test_template.hpp \ | ||
| --exclude-lines-by-pattern '^\s*$' \ | ||
| --exclude-lines-by-pattern '^\s*};$' \ | ||
| --exclude-unreachable-branches \ | ||
| --exclude-throw-branches \ | ||
| --exclude-noncode-lines \ | ||
| -j 2 \ | ||
| --xml \ | ||
| --output ${{ github.workspace }}/build/coverage_report.xml | ||
| -j \ | ||
| --cobertura \ | ||
| --output ${GITHUB_WORKSPACE}/build/coverage_report.xml | ||
| - name: Submit coverage build | ||
| uses: codecov/[email protected] | ||
| with: | ||
| files: ${{ github.workspace }}/build/coverage_report.xml | ||
| files: build/coverage_report.xml | ||
| fail_ci_if_error: false | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -23,77 +23,64 @@ defaults: | |
| jobs: | ||
| build: | ||
| name: IWYU | ||
| runs-on: ubuntu-22.04 | ||
| timeout-minutes: 120 | ||
| runs-on: ubuntu-latest | ||
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' | ||
| container: | ||
| image: ghcr.io/seqan/clang-18 | ||
| volumes: | ||
| - /home/runner:/home/runner | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 1 | ||
| submodules: false | ||
| path: hibf | ||
| token: ${{ secrets.SEQAN_ACTIONS_PAT }} | ||
|
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||
| - name: Setup toolchain | ||
| uses: seqan/actions/setup-toolchain@main | ||
| with: | ||
| compiler: clang-17 | ||
| ccache_size: 75M | ||
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||
| - name: Build IWYU | ||
| run: | | ||
| mkdir iwyu | ||
| cd iwyu | ||
| git clone https://github.com/include-what-you-use/include-what-you-use.git --branch 0.21 | ||
| mkdir build | ||
| cd build | ||
| mkdir iwyu && cd iwyu | ||
| git clone https://github.com/include-what-you-use/include-what-you-use.git --branch 0.22 | ||
| mkdir build && cd build | ||
| cmake ../include-what-you-use -G "Unix Makefiles" \ | ||
| -DCMAKE_BUILD_TYPE=Release \ | ||
| -DCMAKE_INSTALL_PREFIX=/usr \ | ||
| -DCMAKE_PREFIX_PATH=/usr/lib/llvm-17 \ | ||
| -DCMAKE_CXX_COMPILER_LAUNCHER=ccache \ | ||
| -DCMAKE_C_COMPILER_LAUNCHER=ccache | ||
| make -j2 | ||
| sudo make install | ||
| -DCMAKE_PREFIX_PATH=/usr/lib/llvm-18 | ||
| make -j | ||
| make install | ||
| - name: Configure Test | ||
| run: | | ||
| mkdir build | ||
| cd build | ||
| cmake ../hibf/test/iwyu -DCMAKE_BUILD_TYPE=Release \ | ||
| -DCMAKE_CXX_FLAGS="-stdlib=libc++" \ | ||
| -DHIBF_VERBOSE_TESTS=OFF | ||
| mkdir build && cd build | ||
| cmake ../hibf/test/iwyu -DCMAKE_BUILD_TYPE=Release | ||
| - name: Run Test | ||
| working-directory: build | ||
| run: | | ||
| ccache -z | ||
| cd build | ||
| make -j2 2> out.txt | ||
| make -j 2> out.txt | ||
| ccache -sv | ||
| - name: Apply changes | ||
| working-directory: build | ||
| run: | | ||
| fix_includes.py --nosafe_headers \ | ||
| --comments \ | ||
| --noreorder \ | ||
| --ignore_re ".*/include/hibf/contrib/.*" < build/out.txt | ||
| --ignore_re ".*/include/hibf/contrib/.*" < out.txt | ||
| - name: Add changes | ||
| id: changed_files | ||
| working-directory: hibf | ||
| run: | | ||
| cd hibf | ||
| git add . | ||
| CPP_LIST=$(git diff --name-only HEAD | { grep -E "(\.cpp|\.hpp)$" || test $? = 1; } | xargs) | ||
| echo "cpp_list=$CPP_LIST" >> $GITHUB_OUTPUT | ||
| - name: Run clang-format | ||
| if: ${{ steps.changed_files.outputs.cpp_list }} | ||
| working-directory: hibf | ||
| run: | | ||
| sudo apt-get remove --yes libllvm15* | ||
| install clang-format-15 | ||
| cd hibf | ||
| clang-format-15 --style=file -i ${{ steps.changed_files.outputs.cpp_list }} | ||
| clang-format-18 --style=file -i ${{ steps.changed_files.outputs.cpp_list }} | ||
| git add . | ||
| - name: Import GPG key | ||
|
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@@ -104,14 +91,14 @@ jobs: | |
| passphrase: ${{ secrets.SEQAN_ACTIONS_GPG_PASSPHRASE }} | ||
| git_user_signingkey: true | ||
| git_commit_gpgsign: true | ||
| workdir: ${{ github.workspace }}/hibf | ||
| workdir: hibf | ||
|
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| - name: Open PR | ||
| if: ${{ steps.changed_files.outputs.cpp_list }} | ||
| uses: peter-evans/create-pull-request@v6 | ||
| with: | ||
| token: ${{ secrets.SEQAN_ACTIONS_PAT }} | ||
| path: ${{ github.workspace }}/hibf | ||
| path: hibf | ||
| commit-message: "[MISC] IWYU" | ||
| committer: "seqan-actions[bot] <[email protected]>" | ||
| author: "seqan-actions[bot] <[email protected]>" | ||
|
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||
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