[MISC] IWYU

include/hibf/sketch/minhashes.hpp

@@ -9,9 +9,10 @@
 
 #pragma once
 
-#include <cstdint>
-#include <span>
-#include <vector>
+#include <cstddef> // for size_t
+#include <cstdint> // for uint64_t
+#include <span>    // for span
+#include <vector>  // for vector
 
 #include <hibf/platform.hpp>
 

src/sketch/compute_sketches.cpp

@@ -2,18 +2,25 @@
 // SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
 // SPDX-License-Identifier: BSD-3-Clause
 
-#include <atomic>
+#include <algorithm>  // for __fn, sort_heap, fill, make_heap
+#include <atomic>     // for atomic_flag
+#include <cassert>    // for assert
 #include <cinttypes>  // for uint64_t
 #include <cstddef>    // for size_t
-#include <functional> // for function
-#include <span>       // for vector
-#include <vector>     // for vector
+#include <functional> // for equal_to, function
+#include <limits>     // for numeric_limits
+#include <span>       // for span
+#include <stdexcept>  // for runtime_error
+#include <string>     // for char_traits, operator+, to_string
+#include <utility>    // for move
+#include <vector>     // for vector, allocator
 
 #include <hibf/config.hpp>                      // for config, insert_iterator
-#include <hibf/contrib/robin_hood.hpp>          // for unordered_flat_set
+#include <hibf/contrib/robin_hood.hpp>          // for hash, unordered_flat_set
 #include <hibf/sketch/compute_sketches.hpp>     // for compute_sketches
 #include <hibf/sketch/estimate_kmer_counts.hpp> // for estimate_kmer_counts
 #include <hibf/sketch/hyperloglog.hpp>          // for hyperloglog
+#include <hibf/sketch/minhashes.hpp>            // for minhashes
 
 namespace seqan::hibf::sketch
 {

src/sketch/minhashes.cpp

@@ -2,10 +2,13 @@
 // SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
 // SPDX-License-Identifier: BSD-3-Clause
 
-#include <algorithm>
-#include <cassert>
+#include <algorithm> // for __fn, is_sorted, all_of, find, pop_heap, push_heap
+#include <cassert>   // for assert
+#include <cinttypes> // for uint64_t
+#include <span>      // for span
+#include <vector>    // for vector
 
-#include <hibf/sketch/minhashes.hpp>
+#include <hibf/sketch/minhashes.hpp> // for minhashes
 
 namespace seqan::hibf::sketch
 {

test/performance/sketch/compute_sketches_benchmark.cpp

@@ -2,9 +2,16 @@
 // SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
 // SPDX-License-Identifier: BSD-3-Clause
 
-#include <benchmark/benchmark.h>
+#include <benchmark/benchmark.h> // for BENCHMARK_TEMPLATE, Benchmark, State
 
-#include <hibf/sketch/compute_sketches.hpp>
+#include <cinttypes> // for uint8_t
+#include <cstddef>   // for size_t
+#include <vector>    // for vector
+
+#include <hibf/config.hpp>                  // for config, insert_iterator
+#include <hibf/sketch/compute_sketches.hpp> // for compute_sketches
+#include <hibf/sketch/hyperloglog.hpp>      // for hyperloglog
+#include <hibf/sketch/minhashes.hpp>        // for minhashes
 
 enum class sketch : uint8_t
 {

test/unit/hibf/interleaved_bloom_filter_test.cpp

@@ -6,18 +6,19 @@
 #    define HIBF_HAS_AVX512 0
 #endif
 
-#include <gtest/gtest.h> // for Test, Message, TestPartResult, AssertionResult, TestInfo, EXPEC...
+#include <gtest/gtest.h> // for Message, Test, AssertionResult, TestPartResult, TestInfo, EXPEC...
 
-#include <algorithm>   // for __for_each_fn, for_each
+#include <algorithm>   // for __fn, for_each
 #include <array>       // for array
+#include <cinttypes>   // for uint64_t
 #include <compare>     // for operator<, strong_ordering
 #include <cstddef>     // for size_t
-#include <functional>  // for identity, function
-#include <ranges>      // for iota_view, operator==, _Iota, iota, views
+#include <functional>  // for function
+#include <ranges>      // for iota_view, __fn, iota, views, operator==
 #include <stdexcept>   // for logic_error, invalid_argument
 #include <type_traits> // for is_copy_assignable_v, is_copy_constructible_v, is_default_const...
 #include <utility>     // for move
-#include <vector>      // for vector, allocator
+#include <vector>      // for vector
 
 #include <hibf/config.hpp>                   // for insert_iterator, config
 #include <hibf/interleaved_bloom_filter.hpp> // for interleaved_bloom_filter, bin_index, bin_count, bin_size, hash_...

test/unit/hibf/sketch/compute_sketches_test.cpp

@@ -2,16 +2,19 @@
 // SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
 // SPDX-License-Identifier: BSD-3-Clause
 
-#include <gtest/gtest-spi.h>
-#include <gtest/gtest.h> // for Test, Message, TestPartResult, EXPECT_EQ, TestInfo, ASSERT_EQ
-
-#include <cinttypes> // for uint64_t
-#include <cstddef>   // for size_t
-#include <random>    // for uniform_int_distribution, mt19937_64
-#include <vector>    // for allocator, vector
-
-#include <hibf/sketch/compute_sketches.hpp>
-#include <hibf/test/expect_range_eq.hpp> // for expect_range_eq, EXPECT_RANGE_EQ
+#include <gtest/gtest.h> // for Message, TestPartResult, TestInfo, AssertionResult, ASSERT_EQ
+
+#include <cstddef>    // for size_t
+#include <functional> // for function
+#include <ranges>     // for __fn, iota, views
+#include <stdexcept>  // for runtime_error
+#include <vector>     // for vector
+
+#include <hibf/config.hpp>                  // for config, insert_iterator
+#include <hibf/sketch/compute_sketches.hpp> // for compute_sketches
+#include <hibf/sketch/hyperloglog.hpp>      // for hyperloglog
+#include <hibf/sketch/minhashes.hpp>        // for minhashes
+#include <hibf/test/expect_range_eq.hpp>    // for expect_range_eq, EXPECT_RANGE_EQ
 
 class compute_sketches_test : public ::testing::Test
 {

test/unit/hibf/sketch/minhashes_test.cpp

@@ -2,10 +2,18 @@
 // SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
 // SPDX-License-Identifier: BSD-3-Clause
 
-#include <gtest/gtest.h> // for Test, Message, TestInfo, TestPartResult, TEST, EXPECT_EQ
+#include <gtest/gtest.h> // for AssertionResult, Message, Test, TestPartResult, EXPECT_FALSE, TestInfo
+
+#include <algorithm> // for __fn, equal, make_heap
+#include <cinttypes> // for uint64_t
+#include <cstddef>   // for size_t
+#include <ranges>    // for __fn, iota, views
+#include <span>      // for span
+#include <utility>   // for move
+#include <vector>    // for vector
 
 #include <hibf/misc/iota_vector.hpp>     // for iota_vector
-#include <hibf/sketch/minhashes.hpp>     // for minhash
+#include <hibf/sketch/minhashes.hpp>     // for minhashes
 #include <hibf/test/expect_range_eq.hpp> // for expect_range_eq, EXPECT_RANGE_EQ
 
 TEST(minhashes_test, ctor)