Landingpage without screenshots #129
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test | |
| on: | |
| pull_request_target: | |
| concurrency: | |
| group: test-${{ github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| build-html: | |
| name: Build HTML | |
| runs-on: ubuntu-latest | |
| if: github.repository_owner == 'seqan' | |
| timeout-minutes: 30 | |
| steps: | |
| # pull_request_target does not checkout the merge commit by default | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: "refs/pull/${{ github.event.number }}/merge" | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: snakemake | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| channels: conda-forge | |
| channel-priority: strict | |
| environment-file: workflow/envs/snakemake.yml | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Extract data | |
| run: | | |
| mkdir -p ${{ github.workspace }}/results/raw_data | |
| tar xf ${{ github.workspace }}/.github/data/data.tar.zst -C ${{ github.workspace }}/results/raw_data | |
| - name: Run snakemake | |
| run: snakemake --use-conda --conda-frontend mamba --cores $(nproc) | |
| - name: Deploy Preview | |
| if: github.repository_owner == 'seqan' | |
| uses: seqan/actions/documentation_deploy_preview@main | |
| with: | |
| deploy_host: ${{ secrets.DEPLOY_HOST }} | |
| deploy_user: ${{ secrets.DEPLOY_USER }} | |
| deploy_ssh_key: ${{ secrets.DEPLOY_SSH_KEY }} | |
| deploy_base_path: ${{ secrets.DEPLOY_PREVIEW_BASE_PATH }} | |
| source_path_user_doc: results/html | |
| token: ${{ secrets.SEQAN_ACTIONS_PAT }} |