branch phib_with_user_bins from chopper. · seqan/raptor@37c59db

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branch phib_with_user_bins from chopper.

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smehringer committed Nov 17, 2023

1 parent 1ed4ade commit 37c59db

lib/chopper

Submodule chopper updated 35 files

+0 −3		.gitmodules
+38 −11		include/chopper/configuration.hpp
+2 −0		include/chopper/input_functor.hpp
+0 −12		include/chopper/layout/hibf_statistics.hpp
+3 −2		include/chopper/layout/input.hpp
+17 −1		include/chopper/workarounds.hpp
+1 −1		lib/hibf
+0 −1		lib/simde
+0 −1		src/CMakeLists.txt
+7 −1		src/chopper.cpp
+1 −1		src/input_functor.cpp
+2 −1		src/layout/determine_best_number_of_technical_bins.cpp
+190 −28		src/layout/execute.cpp
+32 −17		src/layout/hibf_statistics.cpp
+10 −5		src/layout/input.cpp
+87 −0		src/measure_HIBF.cpp
+59 −1		src/set_up_parser.cpp
+54 −0		src/util/display_layout/compute_ibf_size.hpp
+230 −119		src/util/display_layout/general.cpp
+39 −2		src/util/display_layout/process_file.cpp
+9 −1		src/util/display_layout/shared.hpp
+36 −59		src/util/display_layout/sizes.cpp
+26 −20		test/api/config_test.cpp
+11 −0		test/api/display_layout/CMakeLists.txt
+93 −0		test/api/display_layout/compute_ibf_size_test.cpp
+1 −0		test/api/layout/CMakeLists.txt
+7 −3		test/api/layout/execute_layout_test.cpp
+25 −19		test/api/layout/execute_with_estimation_test.cpp
+4 −3		test/api/layout/hibf_statistics_test.cpp
+149 −0		test/api/layout/input_test.cpp
+3 −10		test/benchmark/benchmark_data/query_cost/bin_influence_benchmark.cpp
+9 −0		test/cli/CMakeLists.txt
+9 −5		test/cli/cli_chopper_pipeline_test.cpp
+45 −0		test/cli/cli_timing_output_test.cpp
+132 −0		test/cli/util_display_layout_test.cpp

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