test

Signed-off-by: Pablo <[email protected]>

recipes/bioconductor-ebseq/build.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .

recipes/bioconductor-ebseq/meta.yaml

@@ -0,0 +1,48 @@
+{% set version = "1.38.0" %}
+{% set name = "EBSeq" %}
+{% set bioc = "3.16" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 3dcbccf3dab22b82b2535991266b3f02
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  noarch: generic
+requirements:
+  host:
+    - 'r-base >=4.1,<4.2'
+    - r-blockmodeling
+    - r-gplots
+    - r-testthat
+  run:
+    - 'r-base >=4.1,<4.2'
+    - r-blockmodeling
+    - r-gplots
+    - r-testthat
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'An R package for gene and isoform differential expression analysis of RNA-seq data'
+  description: 'Differential Expression analysis at both gene and isoform level using RNA-seq data'
+extra:
+  identifiers:
+    - biotools:ebseq
+    - doi:10.1093/bioinformatics/btt087
+  parent_recipe:
+    name: bioconductor-ebseq
+    path: recipes/bioconductor-ebseq
+    version: 1.20.0
+