add cicd

Signed-off-by: Pablo <[email protected]>

.github/workflows/build.yml

@@ -0,0 +1,27 @@
+name: EEL continuous build
+on:
+  push:
+    branches:
+      - '*'
+      - '!refs/tags/.*'
+    tags-ignore:
+      - '*'
+
+jobs:
+  build:
+    name: Build EEL
+    runs-on: self-hosted
+    timeout-minutes: 90
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+      - name: Check space
+        run: df -h
+      - name: Build modified recipe
+        env:
+          ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }}
+        run: source cicd/build_recipes.sh
+

cicd/build_recipes.sh

@@ -0,0 +1,35 @@
+#!/bin/bash
+
+setup_conda(){
+    echo -e "\e[34m Setup conda \e[0m"
+    (
+    curl -O https://repo.anaconda.com/archive/Anaconda3-2022.10-Linux-$(arch).sh
+    bash ./Anaconda3-2022.10-Linux-$(arch).sh -b -p $HOME/anaconda3
+
+    echo 'export PATH=~/anaconda3/bin:$PATH' >> ~/.bashrc
+    source ~/.bashrc
+
+    ~/anaconda3/bin/conda config --system --add channels defaults
+    ~/anaconda3/bin/conda config --system --add channels conda-forge
+    ~/anaconda3/bin/conda config --system --add channels bioconda
+    ~/anaconda3/bin/conda config --system --add channels seqera
+    )
+}
+
+build_recipe(){
+    echo -e "\e[34m Building recipe $1 \e[0m"
+    (cd "recipes/$1"; ~/anaconda3/bin/conda build .)
+}
+
+[ -e ~/anaconda3 ] || setup_conda
+
+git diff --name-only HEAD^ HEAD | grep '^recipes/' | cut -d/ -f2 | sort | uniq | while read line
+do
+    build_recipe "$line"
+done
+
+# create key at https://anaconda.org/<user>/settings/access and put in the env_variable ANACONDA_API_TOKEN
+find ~/anaconda3/conda-bld/ -iname '*.tar.bz2' | while read line
+do
+    ~/anaconda3/bin/anaconda upload --user seqera --force "$line"
+done