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Dev -> Master for 0.5.0 release #62

Merged
merged 23 commits into from
Nov 12, 2024
Merged

Dev -> Master for 0.5.0 release #62

merged 23 commits into from
Nov 12, 2024

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drpatelh
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  • Remove dependency on external library/grape library

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

robsyme and others added 23 commits October 22, 2024 11:58
@robsyme
Remove dependency on external library/grape (#61)
3ca08ce 
* Remove dependency on external library/grape library
@drpatelh
fix: add maxForks setting for Seqera CLI to overcome API issues
76da197
@drpatelh
chore: bump pipeline version to 0.5.0
69a4ead
@drpatelh
chore: update CHANGELOG
b39bf58
@drpatelh
fix: pin nf-core tools version to bypass schema validation
5ff529e
@drpatelh
fix: revert nf-core pipelines lint to nf-core lint
371be90
@drpatelh
fix: update snapshots for SEQERA_RUNS_DUMP
2875b2b
@drpatelh
Merge pull request #63 from seqeralabs/0.5.0_release
e85cb21 
Add maxForks setting for Seqera CLI to overcome API issues
@maxulysse
fix linting
3553391
@maxulysse
update CHANGELOG
7000b46
@maxulysse
update assets/multiqc_report.html
bbb6d5e
@maxulysse
fix linting
b831549
@maxulysse
fix linting
a9f62b7
@maxulysse
Update CHANGELOG.md
a832d10
@drpatelh
Merge pull request #65 from seqeralabs/ECLINT
08a907f 
Fix Eclint
@pinin4fjords
Update test_run_ids.csv
4057e63
@drpatelh
Merge pull request #67 from seqeralabs/non_fusion_run_in_showcase
7f7f400 
Update test_run_ids.csv to use a non-fusion run from community showcase
@ejseqera
fix: cli arg parsing for comma and space sep list
b283fad
@ejseqera
Merge branch 'origin/dev' into fix_cli_args_parsing
d200ff5
@ejseqera
fix: update snapshots
9b264ea
@drpatelh
fix tests
f5c4a60
@drpatelh
Update CHANGELOG.md
e787276
@drpatelh
Merge pull request #69 from seqeralabs/fix_cli_args_parsing
95f1667 
Fix parsing of extra args to tw CLI
FriederikeHanssen
FriederikeHanssen approved these changes Nov 12, 2024
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looks good

@drpatelh drpatelh merged commit 6401998 into main Nov 12, 2024
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@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

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6 participants
@drpatelh @FriederikeHanssen @robsyme @maxulysse @pinin4fjords @ejseqera