Update nf-tests

seqeralabs · Oct 4, 2023 · 7185d96 · 7185d96
1 parent 3886fdd
commit 7185d96
Show file tree

Hide file tree

Showing 4 changed files with 31 additions and 58 deletions.
diff --git a/tests/main.nf.test b/tests/main.nf.test
@@ -8,7 +8,7 @@ nextflow_pipeline {
 
         when {
             params {
-              remoteFile = "tests/testfile.txt"
+              remoteFile = "${baseDir}/tests/testfile.txt"
             }
         }
 
@@ -17,7 +17,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 13
             assert workflow.trace.succeeded().size() == 12
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(workflow.out, path("work/outputs").list()).match()
+            assert snapshot(path("work/outputs").list()).match()
         }
 
     }
@@ -27,7 +27,7 @@ nextflow_pipeline {
         when {
             params {
               skip = "test_success"
-              remoteFile = "tests/testfile.txt"
+              remoteFile = "${baseDir}/tests/testfile.txt"
             }
         }
 
@@ -36,7 +36,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 12
             assert workflow.trace.succeeded().size() == 11
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(workflow.out, path("work/outputs").list()).match()
+            assert snapshot(path("work/outputs").list()).match()
         }
 
     }
@@ -47,7 +47,7 @@ nextflow_pipeline {
         when {
             params {
               run = "test_success"
-              remoteFile = "tests/testfile.txt"
+              remoteFile = "$baseDir/tests/testfile.txt"
             }
         }
 
@@ -56,7 +56,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 1
             assert workflow.trace.succeeded().size() == 1
             assert workflow.trace.failed().size()    == 0
-            assert snapshot(workflow.out, path("work/outputs").list()).match()
+            assert snapshot(path("work/outputs").list()).match()
         }
 
     }
@@ -74,7 +74,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 12
             assert workflow.trace.succeeded().size() == 11
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(workflow.out, path(params.outdir).list()).match()
+            assert snapshot(path(params.outdir).list()).match()
         }
 
     }

diff --git a/tests/main.nf.test.snap b/tests/main.nf.test.snap
@@ -1,70 +1,42 @@
 {
-    "Should skip TEST_SUCCESS": {
-        "content": [
-            {
-
-            }
-        ],
-        "timestamp": "2023-08-18T11:05:34+0000"
-    },
     "Should skip a process": {
         "content": [
-            {
-
-            },
             [
-                [
-                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-                ],
-                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ]
+                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ],
+            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
-        "timestamp": "2023-08-18T11:05:34+0000"
+        "timestamp": "2023-10-04T11:44:43.844549"
     },
     "Should publish to alternative directory": {
         "content": [
-            {
-
-            },
             [
-                [
-                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-                ],
-                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ]
+                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ],
+            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
-        "timestamp": "2023-08-18T11:05:34+0000"
+        "timestamp": "2023-10-04T11:44:48.06743"
     },
     "Should only run one process": {
         "content": [
-            {
-
-            },
             [
-                [
-                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-                ],
-                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ]
+                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ],
+            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
-        "timestamp": "2023-08-18T11:05:34+0000"
+        "timestamp": "2023-10-04T11:44:45.712702"
     },
     "Should run without failures": {
         "content": [
-            {
-
-            },
             [
-                [
-                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-                ],
-                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ]
+                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ],
+            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
-        "timestamp": "2023-08-18T11:05:34+0000"
+        "timestamp": "2023-10-04T11:44:41.565486"
     }
-}
+}
diff --git a/tests/main.test_stage_remote.test b/tests/main.test_stage_remote.test
@@ -9,7 +9,7 @@ nextflow_process {
         when {
 
             params {
-              remoteFile = "tests/testfile.txt"
+              remoteFile = "${baseDir}/tests/testfile.txt"
             }
 
             process {

diff --git a/tests/main.test_success.nf.test b/tests/main.test_success.nf.test
@@ -8,7 +8,8 @@ nextflow_process {
 
         then {
             assert process.success
-            assert snapshot(process.out).match()
+            assert process.exitStatus == 0
+            assert process.trace.tasks().size() == 1
         }
 
     }