Update tests to include output paths

seqeralabs · Aug 18, 2023 · c45ee1f · c45ee1f
1 parent eff96fb
commit c45ee1f
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Showing 2 changed files with 32 additions and 14 deletions.
diff --git a/tests/main.nf.test b/tests/main.nf.test
@@ -17,7 +17,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 13
             assert workflow.trace.succeeded().size() == 12
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(workflow.out).match()
+            assert snapshot(workflow.out, path("work/outputs").list()).match()
         }
 
     }
@@ -36,13 +36,11 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 12
             assert workflow.trace.succeeded().size() == 11
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(workflow.out).match()
+            assert snapshot(workflow.out, path("work/outputs").list()).match()
         }
 
     }
 
-<<<<<<< HEAD
-=======
 
     test("Should only run one process") {
 
@@ -58,12 +56,11 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 1
             assert workflow.trace.succeeded().size() == 1
             assert workflow.trace.failed().size()    == 0
-            assert snapshot(workflow.out).match()
+            assert snapshot(workflow.out, path("work/outputs").list()).match()
         }
 
     }
 
->>>>>>> a228794 (Add selective running of tests)
     test("Should publish to alternative directory") {
 
         when {

diff --git a/tests/main.nf.test.snap b/tests/main.nf.test.snap
@@ -5,15 +5,22 @@
 
             }
         ],
-        "timestamp": "2023-08-18T10:59:43+0000"
+        "timestamp": "2023-08-18T11:05:34+0000"
     },
     "Should skip a process": {
         "content": [
             {
 
-            }
+            },
+            [
+                [
+                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ],
+                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ]
         ],
-        "timestamp": "2023-08-18T10:59:43+0000"
+        "timestamp": "2023-08-18T11:05:34+0000"
     },
     "Should publish to alternative directory": {
         "content": [
@@ -28,22 +35,36 @@
                 "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
-        "timestamp": "2023-08-18T10:59:43+0000"
+        "timestamp": "2023-08-18T11:05:34+0000"
     },
     "Should only run one process": {
         "content": [
             {
 
-            }
+            },
+            [
+                [
+                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ],
+                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ]
         ],
-        "timestamp": "2023-08-18T10:59:43+0000"
+        "timestamp": "2023-08-18T11:05:34+0000"
     },
     "Should run without failures": {
         "content": [
             {
 
-            }
+            },
+            [
+                [
+                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ],
+                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ]
         ],
-        "timestamp": "2023-08-18T10:59:43+0000"
+        "timestamp": "2023-08-18T11:05:34+0000"
     }
 }