Update nf-tests for v0.8.0

seqeralabs · Oct 4, 2023 · f6e7d46 · f6e7d46
1 parent b42744d
commit f6e7d46
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Showing 17 changed files with 146 additions and 44 deletions.
diff --git a/tests/main.nf.test b/tests/main.nf.test
@@ -9,6 +9,7 @@ nextflow_pipeline {
         when {
             params {
               remoteFile = "${baseDir}/tests/testfile.txt"
+              outdir     = "${baseDir}/output"
             }
         }
 
@@ -17,7 +18,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 13
             assert workflow.trace.succeeded().size() == 12
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(path("work/outputs").list()).match()
+            assert snapshot(workflow, path(params.outdir).list()).match()
         }
 
     }
@@ -26,8 +27,9 @@ nextflow_pipeline {
 
         when {
             params {
-              skip = "test_success"
+              skip       = "test_success"
               remoteFile = "${baseDir}/tests/testfile.txt"
+              outdir     = "${baseDir}/output"
             }
         }
 
@@ -36,7 +38,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 12
             assert workflow.trace.succeeded().size() == 11
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(path("work/outputs").list()).match()
+            assert snapshot(workflow, path(params.outdir).list()).match()
         }
 
     }
@@ -48,6 +50,7 @@ nextflow_pipeline {
             params {
               run = "test_success"
               remoteFile = "$baseDir/tests/testfile.txt"
+              outdir     = "${baseDir}/output"
             }
         }
 
@@ -56,7 +59,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 1
             assert workflow.trace.succeeded().size() == 1
             assert workflow.trace.failed().size()    == 0
-            assert snapshot(path("work/outputs").list()).match()
+            assert snapshot(workflow, path(params.outdir).list()).match()
         }
 
     }
@@ -65,7 +68,7 @@ nextflow_pipeline {
 
         when {
             params {
-              outdir = "results"
+              outdir = "${baseDir}/output2"
             }
         }
 
@@ -74,7 +77,7 @@ nextflow_pipeline {
             assert workflow.trace.tasks().size()     == 12
             assert workflow.trace.succeeded().size() == 11
             assert workflow.trace.failed().size()    == 1
-            assert snapshot(path(params.outdir).list()).match()
+            assert snapshot(workflow, path("${baseDir}/output2").list()).match()
         }
 
     }

diff --git a/tests/main.nf.test.snap b/tests/main.nf.test.snap
@@ -1,42 +1,126 @@
 {
     "Should skip a process": {
         "content": [
+            {
+                "stderr": [
+
+                ],
+                "errorReport": "",
+                "exitStatus": 0,
+                "failed": false,
+                "stdout": [
+
+                ],
+                "errorMessage": "",
+                "trace": {
+                    "tasksFailed": 1,
+                    "tasksCount": 12,
+                    "tasksSucceeded": 11
+                },
+                "name": "workflow",
+                "success": true
+            },
             [
-                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ],
-            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                [
+                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ],
+                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ]
         ],
-        "timestamp": "2023-10-04T11:44:43.844549"
+        "timestamp": "2023-10-04T12:09:12.963778"
     },
     "Should publish to alternative directory": {
         "content": [
+            {
+                "stderr": [
+
+                ],
+                "errorReport": "",
+                "exitStatus": 0,
+                "failed": false,
+                "stdout": [
+
+                ],
+                "errorMessage": "",
+                "trace": {
+                    "tasksFailed": 1,
+                    "tasksCount": 12,
+                    "tasksSucceeded": 11
+                },
+                "name": "workflow",
+                "success": true
+            },
             [
-                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ],
-            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                [
+                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ],
+                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ]
         ],
-        "timestamp": "2023-10-04T11:44:48.06743"
+        "timestamp": "2023-10-04T12:09:17.25461"
     },
     "Should only run one process": {
         "content": [
+            {
+                "stderr": [
+
+                ],
+                "errorReport": "",
+                "exitStatus": 0,
+                "failed": false,
+                "stdout": [
+
+                ],
+                "errorMessage": "",
+                "trace": {
+                    "tasksFailed": 0,
+                    "tasksCount": 1,
+                    "tasksSucceeded": 1
+                },
+                "name": "workflow",
+                "success": true
+            },
             [
-                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ],
-            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                [
+                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ],
+                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ]
         ],
-        "timestamp": "2023-10-04T11:44:45.712702"
+        "timestamp": "2023-10-04T12:09:14.732431"
     },
     "Should run without failures": {
         "content": [
+            {
+                "stderr": [
+
+                ],
+                "errorReport": "",
+                "exitStatus": 0,
+                "failed": false,
+                "stdout": [
+
+                ],
+                "errorMessage": "",
+                "trace": {
+                    "tasksFailed": 1,
+                    "tasksCount": 13,
+                    "tasksSucceeded": 12
+                },
+                "name": "workflow",
+                "success": true
+            },
             [
-                "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
-            ],
-            "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                [
+                    "test1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                    "test2.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ],
+                "test.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+            ]
         ],
-        "timestamp": "2023-10-04T11:44:41.565486"
+        "timestamp": "2023-10-04T12:07:58.679961"
     }
 }
diff --git a/tests/main.test_bin_script.test.snap b/tests/main.test_bin_script.test.snap
@@ -7,6 +7,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-08-04T14:56:30+0000"
+        "timestamp": "2023-10-04T12:00:35.045745"
     }
 }
diff --git a/tests/main.test_create_file.nf.test.snap b/tests/main.test_create_file.nf.test.snap
@@ -10,6 +10,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-07-20T10:50:02+0000"
+        "timestamp": "2023-10-04T11:56:41.550158"
     }
 }
diff --git a/tests/main.test_create_folder.nf.test.snap b/tests/main.test_create_folder.nf.test.snap
@@ -16,6 +16,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-08-04T15:17:57+0000"
+        "timestamp": "2023-10-04T11:56:39.696681"
     }
 }
diff --git a/tests/main.test_ignore_fail.test b/tests/main.test_ignore_fail.test
@@ -8,7 +8,7 @@ nextflow_process {
 
         then {
             assert process.success
-            assert snapshot(process.out).match()
+            assert snapshot(process).match()
             assert process.trace.failed().size() == 1
             assert process.trace.succeeded().size() == 0
         }

diff --git a/tests/main.test_ignore_fail.test.snap b/tests/main.test_ignore_fail.test.snap
@@ -2,9 +2,25 @@
     "Should run without failures": {
         "content": [
             {
-
+                "stderr": [
+
+                ],
+                "errorReport": null,
+                "exitStatus": 0,
+                "failed": false,
+                "stdout": [
+
+                ],
+                "errorMessage": null,
+                "trace": {
+                    "tasksFailed": 1,
+                    "tasksCount": 1,
+                    "tasksSucceeded": 0
+                },
+                "name": "TEST_IGNORED_FAIL",
+                "success": true
             }
         ],
-        "timestamp": "2023-08-04T15:05:45+0000"
+        "timestamp": "2023-10-04T12:11:38.820379"
     }
 }
diff --git a/tests/main.test_input.nf.test.snap b/tests/main.test_input.nf.test.snap
@@ -7,6 +7,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-07-20T10:49:51+0000"
+        "timestamp": "2023-10-04T11:56:21.166077"
     }
 }
diff --git a/tests/main.test_mv_file.nf.test.snap b/tests/main.test_mv_file.nf.test.snap
@@ -7,6 +7,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-08-18T10:33:06+0000"
+        "timestamp": "2023-10-04T11:56:19.102784"
     }
 }
diff --git a/tests/main.test_mv_folder_contents.nf.test.snap b/tests/main.test_mv_folder_contents.nf.test.snap
@@ -20,6 +20,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-08-18T10:33:34+0000"
+        "timestamp": "2023-10-04T11:56:17.157386"
     }
 }
diff --git a/tests/main.test_pass_file.nf.test.snap b/tests/main.test_pass_file.nf.test.snap
@@ -10,6 +10,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-07-20T10:49:46+0000"
+        "timestamp": "2023-10-04T11:56:24.966198"
     }
 }
diff --git a/tests/main.test_pass_folder.nf.test.snap b/tests/main.test_pass_folder.nf.test.snap
@@ -20,6 +20,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-08-04T15:47:13+0000"
+        "timestamp": "2023-10-04T11:56:15.249734"
     }
 }
diff --git a/tests/main.test_publish_file.nf.test.snap b/tests/main.test_publish_file.nf.test.snap
@@ -7,6 +7,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-07-20T10:49:56+0000"
+        "timestamp": "2023-10-04T11:56:23.047403"
     }
 }
diff --git a/tests/main.test_publish_folder.nf.test.snap b/tests/main.test_publish_folder.nf.test.snap
@@ -10,6 +10,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-08-04T17:04:25+0000"
+        "timestamp": "2023-10-04T11:56:26.981311"
     }
 }
diff --git a/tests/main.test_stage_remote.test.snap b/tests/main.test_stage_remote.test.snap
@@ -7,6 +7,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-07-20T15:50:59+0000"
+        "timestamp": "2023-10-04T12:00:49.001095"
     }
 }
diff --git a/tests/main.test_success.nf.test b/tests/main.test_success.nf.test
@@ -10,6 +10,7 @@ nextflow_process {
             assert process.success
             assert process.exitStatus == 0
             assert process.trace.tasks().size() == 1
+            assert snapshot(process).match()
         }
 
     }

diff --git a/tests/main.test_success.nf.test.snap b/tests/main.test_success.nf.test.snap
@@ -1,10 +1,8 @@
 {
     "Should run without failures": {
         "content": [
-            {
-
-            }
+
         ],
-        "timestamp": "2023-07-20T10:50:08+0000"
+        "timestamp": "2023-10-04T12:01:15.677026"
     }
 }