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refactor: rewrite nf-tests to use assertAll and precise naming #26

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merged 1 commit into from
Apr 18, 2024
Merged

refactor: rewrite nf-tests to use assertAll and precise naming #26

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48 changes: 28 additions & 20 deletions tests/main.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -13,11 +13,13 @@ nextflow_pipeline{
}

then {
assert workflow.success
assert workflow.trace.tasks().size() == 14
assert workflow.trace.succeeded().size() == 13
assert workflow.trace.failed().size() == 1
assert snapshot(workflow, path(params.outdir).list()).match()
assertAll(
{ assert workflow.success },
{ assert workflow.trace.tasks().size() == 14 },
{ assert workflow.trace.succeeded().size() == 13 },
{ assert workflow.trace.failed().size() == 1 },
{ assert snapshot(workflow, path(params.outdir).list()).match() }
)
}

}
Expand All @@ -33,11 +35,13 @@ nextflow_pipeline{
}

then {
assert workflow.success
assert workflow.trace.tasks().size() == 13
assert workflow.trace.succeeded().size() == 12
assert workflow.trace.failed().size() == 1
assert snapshot(workflow, path(params.outdir).list()).match()
assertAll(
{ assert workflow.success },
{ assert workflow.trace.tasks().size() == 13 },
{ assert workflow.trace.succeeded().size() == 12 },
{ assert workflow.trace.failed().size() == 1 },
{ assert snapshot(workflow, path(params.outdir).list()).match() }
)
}

}
Expand All @@ -54,11 +58,13 @@ nextflow_pipeline{
}

then {
assert workflow.success
assert workflow.trace.tasks().size() == 1
assert workflow.trace.succeeded().size() == 1
assert workflow.trace.failed().size() == 0
assert snapshot(workflow, path(params.outdir).list()).match()
assertAll(
{ assert workflow.success },
{ assert workflow.trace.tasks().size() == 1 },
{ assert workflow.trace.succeeded().size() == 1 },
{ assert workflow.trace.failed().size() == 0 },
{ assert snapshot(workflow, path(params.outdir).list()).match() }
)
}

}
Expand All @@ -73,11 +79,13 @@ nextflow_pipeline{
}

then {
assert workflow.success
assert workflow.trace.tasks().size() == 14
assert workflow.trace.succeeded().size() == 13
assert workflow.trace.failed().size() == 1
assert snapshot(workflow, path("${launchDir}/output").list()).match()
assertAll(
{ assert workflow.success },
{ assert workflow.trace.tasks().size() == 14 },
{ assert workflow.trace.succeeded().size() == 13 },
{ assert workflow.trace.failed().size() == 1 },
{ assert snapshot(workflow, path("${launchDir}/output").list()).match() }
)
}

}
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8 changes: 5 additions & 3 deletions tests/main.test_bin_script.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,13 @@ nextflow_process {
script "main.nf"
process "TEST_BIN_SCRIPT"

test("Should run without failures") {
test("TEST_BIN_SCRIPT") {

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 5 additions & 3 deletions tests/main.test_create_file.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,13 @@ nextflow_process {
script "main.nf"
process "TEST_CREATE_FILE"

test("Should run without failures") {
test("TEST_CREATE_FILE") {

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 6 additions & 2 deletions tests/main.test_create_file.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"Should run without failures": {
"TEST_CREATE_FILE": {
"content": [
{
"0": [
Expand All @@ -10,6 +10,10 @@
]
}
],
"timestamp": "2023-10-04T11:56:41.550158"
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-04-18T17:19:44.512229"
}
}
8 changes: 5 additions & 3 deletions tests/main.test_create_folder.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,13 @@ nextflow_process {
script "main.nf"
process "TEST_CREATE_FOLDER"

test("Should run without failures") {
test("TEST_CREATE_FOLDER") {

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 6 additions & 2 deletions tests/main.test_create_folder.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"Should run without failures": {
"TEST_CREATE_FOLDER": {
"content": [
{
"0": [
Expand All @@ -16,6 +16,10 @@
]
}
],
"timestamp": "2023-10-04T11:56:39.696681"
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-04-18T17:19:42.631931"
}
}
12 changes: 7 additions & 5 deletions tests/main.test_ignore_fail.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,13 +4,15 @@ nextflow_process {
script "main.nf"
process "TEST_IGNORED_FAIL"

test("Should run without failures") {
test("TEST_IGNORED_FAIL") {

then {
assert process.success
assert snapshot(process).match()
assert process.trace.failed().size() == 1
assert process.trace.succeeded().size() == 0
assertAll(
{ assert process.success },
{ assert snapshot(process).match() },
{ assert process.trace.failed().size() == 1 },
{ assert process.trace.succeeded().size() == 0 }
)
}

}
Expand Down
8 changes: 5 additions & 3 deletions tests/main.test_input.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ nextflow_process {
script "main.nf"
process "TEST_INPUT"

test("Should run without failures") {
test("TEST_INPUT") {

when {
process {
Expand All @@ -15,8 +15,10 @@ nextflow_process {
}

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 6 additions & 2 deletions tests/main.test_input.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,12 +1,16 @@
{
"Should run without failures": {
"TEST_INPUT": {
"content": [
{
"0": [
"alpha\n"
]
}
],
"timestamp": "2023-10-04T11:56:21.166077"
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-04-18T17:19:23.807701"
}
}
8 changes: 5 additions & 3 deletions tests/main.test_mv_file.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,13 @@ nextflow_process {
script "main.nf"
process "TEST_MV_FILE"

test("Should run without failures") {
test("TEST_MV_FILE") {

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 6 additions & 2 deletions tests/main.test_mv_file.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,12 +1,16 @@
{
"Should run without failures": {
"TEST_MV_FILE": {
"content": [
{
"0": [
"output.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
]
}
],
"timestamp": "2023-10-04T11:56:19.102784"
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-04-18T17:19:21.768791"
}
}
8 changes: 5 additions & 3 deletions tests/main.test_mv_folder_contents.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,13 @@ nextflow_process {
script "main.nf"
process "TEST_MV_FOLDER_CONTENTS"

test("Should run without failures") {
test("TEST_MV_FOLDER_CONTENTS") {

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 6 additions & 2 deletions tests/main.test_mv_folder_contents.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"Should run without failures": {
"TEST_MV_FOLDER_CONTENTS": {
"content": [
{
"0": [
Expand All @@ -14,6 +14,10 @@
]
}
],
"timestamp": "2023-10-04T12:19:57.98459"
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-04-18T17:19:19.746587"
}
}
8 changes: 5 additions & 3 deletions tests/main.test_pass_file.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ nextflow_process {
script "main.nf"
process "TEST_PASS_FILE"

test("Should run without failures") {
test("TEST_PASS_FILE") {

when {
process {
Expand All @@ -15,8 +15,10 @@ nextflow_process {
}

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 6 additions & 2 deletions tests/main.test_pass_file.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"Should run without failures": {
"TEST_PASS_FILE": {
"content": [
{
"0": [
Expand All @@ -10,6 +10,10 @@
]
}
],
"timestamp": "2023-10-04T11:56:24.966198"
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-04-18T17:19:28.094518"
}
}
8 changes: 5 additions & 3 deletions tests/main.test_pass_folder.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ nextflow_process {
script "main.nf"
process "TEST_PASS_FOLDER"

test("Should run without failures") {
test("TEST_PASS_FOLDER") {

when {
process {
Expand All @@ -19,8 +19,10 @@ nextflow_process {
}

then {
assert process.success
assert snapshot(process.out).match()
assertAll(
{ assert process.success },
{ assert snapshot(process.out).match() }
)
}

}
Expand Down
8 changes: 6 additions & 2 deletions tests/main.test_pass_folder.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"Should run without failures": {
"TEST_PASS_FOLDER": {
"content": [
{
"0": [
Expand All @@ -14,6 +14,10 @@
]
}
],
"timestamp": "2023-10-04T12:19:55.945452"
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-04-18T17:19:17.775111"
}
}
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