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[DO NOT MERGE] SD-39 add end to end integration testing for seqerakit #101

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wants to merge 42 commits into from
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[DO NOT MERGE] SD-39 add end to end integration testing for seqerakit #101

wants to merge 42 commits into from

Commits on Dec 1, 2023

  1. fix: boolean value parsing for keys

    @ejseqera
    ejseqera committed Dec 1, 2023
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  2. Merge pull request #100 from seqeralabs/fix_boolean_bug 

    fix: boolean value parsing for keys
    @ejseqera
    ejseqera authored Dec 1, 2023
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Commits on Dec 4, 2023

  1. SD-39 add e2e test for seqerakit

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  2. Add environment yaml to version

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  3. Add tower-cli to environment yaml

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  4. fixup

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  5. Switch back to e2e tests

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  6. Trying some code fixes?

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  7. debugging stuff

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  8. quieter

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  9. Only create new CE plus always teardown

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  10. refine teardown logic

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  11. Comment out pipelines

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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  12. test some stuff

    @adamrtalbot
    adamrtalbot committed Dec 4, 2023
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Commits on Dec 5, 2023

  1. ci: fix e2e yaml

    @ejseqera
    ejseqera committed Dec 5, 2023
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  2. Merge branch 'dev' into SD-39-add-end-to-end-integration-testing-for-… 

    …seqerakit
    @ejseqera
    ejseqera committed Dec 5, 2023
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  3. fix: merge latest changes

    @ejseqera
    ejseqera committed Dec 5, 2023
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  4. Add a manual test for adding the viral recon pipeline

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  5. Add compute-envs back to example

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  6. comment out launch again

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  7. Add some deleting logic to e2e workflow

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  8. Uncomment all the e2e yaml stuff

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  9. Update Tower CLI to v0.9.1

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  10. Add manual install of tw v0.9.1

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  11. comment out tower-cli from environment yaml

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  12. Remove manual addition of viralrecon pipeline

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  13. Update logic

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  14. minor fixup

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  15. Always succeed pre-clearup so it doesn't tank the pipeline

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  16. black

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  17. black 2

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  18. only when main is the target branch

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  19. Add cache to reduce conda startup time

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  20. Revert "Add cache to reduce conda startup time" 

    This reverts commit fe84833.
    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  21. Break up the YAML into smaller chunks (#104) 

    * Break up the YAML into smaller chunks

* Remove empty launch.yml

* Add action example
    @adamrtalbot
    adamrtalbot authored Dec 5, 2023
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  22. Update some Python for better logging

    @adamrtalbot
    adamrtalbot committed Dec 5, 2023
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  23. fix: readd e2e yaml and update to its path in readme

    @ejseqera
    ejseqera committed Dec 5, 2023
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  24. docs: move e2e yaml up a level to avoid being included in tests

    @ejseqera
    ejseqera committed Dec 5, 2023
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  25. fix: move yamls

    @ejseqera
    ejseqera committed Dec 5, 2023
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  26. ci: remove draft overwrite ci workflow

    @ejseqera
    ejseqera committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. Replace conda with pip

    @adamrtalbot
    adamrtalbot committed Dec 6, 2023
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  2. Drop Python cache

    @adamrtalbot
    adamrtalbot committed Dec 6, 2023
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