v1.3.1

What's Changed

• put back BAM files in final output (not a temp file anymore) by @cokelaer in #21
• update metadata by @cokelaer in #22

Full Changelog: v1.3.0...v1.3.1

v1.3.0

What's Changed

• update pipeline to use new sequana_coverage version by @cokelaer in #20

Full Changelog: v1.2.1...v1.3.0

v1.2.1

What's Changed

• Fix bwa_split by @cokelaer in #19

Full Changelog: v1.2.0...v1.2.1

v1.2.0

What's Changed

• implement bwa_split to analyse large fastq files by @cokelaer in #18

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Set sequana_coverage to False by default (to follow docstring) by @khourhin in #15
• Update pipeline to filter BAM from unmapped reads by @cokelaer in #13
• Update pipeline to use click. Fix coverage. by @cokelaer in #16

Full Changelog: v1.0.0...v1.1.0

v1.0.0

What's Changed

• Use graphviz apptainer and workflow updates by @cokelaer in #11

Full Changelog: v0.12.0...v1.0.0

v0.12.0

What's Changed

• add singularity by @cokelaer in #8

Full Changelog: v0.11.1...v0.12.0

v0.11.1

Fix a couple of issues in if statement (when unsettling sequana_coverage)

v0.11.0

implement feature counts for capture-seq projects

v0.10.1

Simplify pipeline (using existing rulegraph and multiqc)