This is an automatically generated1 list of recently updated open source software from the world's 2023 top 50 pharmaceutical companies2 that are present on GitHub. It will be periodically refreshed from these GitHub accounts repositories.
You can also access the ranked listing of open source software they share and which topics are covered by these software.
Taking the 200 last ones.
Note
stars - number of people who especially appreciated the repository
forks - number of people who have cloned the repository in order to modify it
watchers - number of people who are monitoring changes in the repository
main programming language
license
last update date & time
| Rank | Software |
|---|---|
| 1 | insightsengineering/teal.gallery A Gallery of Exploratory Web Apps used for Analyzing Clinical Trial Data clinical-trials, nest, r, shiny, webapp 23 6 R Other 2024-06-08 03:47:14 |
| 2 | rdkit/rdkit The official sources for the RDKit library c-plus-plus, cheminformatics, python, rdkit 2483 845 HTML BSD 3-Clause "New" or "Revised" License 2024-06-08 03:18:22 |
| 3 | Merck/psm3mkv psm3mkv: A package to evaluate the fit and efficiency of three state oncology cost-effectiveness model structures 8 2 R GNU General Public License v3.0 2024-06-08 00:39:26 |
| 4 | genentech/set-dino Python Apache License 2.0 2024-06-07 23:54:30 |
| 5 | genentech/quipcell Fine-scale cellular deconvolution based on Generalized Cross Entropy Jupyter Notebook MIT License 2024-06-07 23:27:17 |
| 6 | Merck/gsDesign2 Group Sequential Design Under Non-Proportional Hazards 15 6 R GNU General Public License v3.0 2024-06-07 23:23:06 |
| 7 | insightsengineering/teal.modules.clinical Provides teal modules for the standard clinical trials outputs clinical-trials, modules, nest, outputs, r, shiny 29 13 R Other 2024-06-07 21:36:01 |
| 8 | insightsengineering/rtables Reporting tables with R pharmaceuticals, r, tables 213 49 R Other 2024-06-07 21:27:39 |
| 9 | Gilead-BioStats/gsmApp 1 1 HTML Apache License 2.0 2024-06-07 20:42:26 |
| 10 | genentech/gReLU gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences. 99 5 Python MIT License 2024-06-07 20:29:13 |
| 11 | GSK-Biostatistics/slushy 12 1 R Apache License 2.0 2024-06-07 20:20:21 |
| 12 | Novartis/Causal-inference-in-RCTs This repository contains code examples for several methods in a Causal Inference in RCTs short course. 18 R MIT License 2024-06-07 19:03:09 |
| 13 | Gilead-BioStats/graphicalMCP Graphical Multiple Comparison Procedures 12 R Apache License 2.0 2024-06-07 18:43:27 |
| 14 | genentech/jmpost 17 5 R 2024-06-07 16:30:15 |
| 15 | pfizer-opensource/scikit-digital-health Python package for the processing and analysis of Inertial Measurement Unit Data actigraphy, imu-sensor, python, sensors, wearables 57 19 Python MIT License 2024-06-07 16:22:37 |
| 16 | Bayer-Group/BIC-subscreenbeat-undefined R GNU General Public License v3.0 2024-06-07 15:56:38 |
| 17 | Sanofi-Public/RDCS-bulkRNASeq-pseudo_ordering Jupyter Notebook Other 2024-06-07 15:54:19 |
| 18 | biosustain/Maud Enzyme models that take into account kinetics, allostery and thermodynamics 26 2 Python GNU General Public License v3.0 2024-06-07 14:54:32 |
| 19 | biosustain/pankb The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers basic pangenome characteristics and advanced pangenome analytics for six major biotech bacteria families. HTML 2024-06-07 14:40:18 |
| 20 | insightsengineering/rlistings Value formatting and ASCII rendering infrastructure for tables and listings. 21 5 R 2024-06-07 13:34:58 |
| 21 | insightsengineering/osprey Community effort to collect TLG code and create a catalogue catalog, graphs, listings, nest, r, tables 4 1 R Other 2024-06-07 13:18:34 |
| 22 | insightsengineering/teal.slice Reproducible slice module for teal applications modules, nest, r, slice 11 5 R Other 2024-06-07 12:56:35 |
| 23 | insightsengineering/teal Exploratory Web Apps for Analyzing Clinical Trial Data clinical-trials, nest, r, shiny, webapp 164 29 R Other 2024-06-07 12:49:26 |
| 24 | Bayer-Group/BIC-megaplotbeat-undefined R GNU General Public License v3.0 2024-06-07 12:48:05 |
| 25 | Boehringer-Ingelheim/BayesianMCPMod 6 3 R Apache License 2.0 2024-06-07 12:20:06 |
| 26 | Boehringer-Ingelheim/dv.templates An R package template with built-in GitHub Actions-based CI/CD workflows. 1 R Other 2024-06-07 11:08:15 |
| 27 | Boehringer-Ingelheim/dv.manager 1 1 R Other 2024-06-07 09:49:40 |
| 28 | Sanofi-IADC/konviw Enterprise public viewer for your Confluence pages cms, confluence, headless-cms, viewer 31 8 TypeScript MIT License 2024-06-07 09:22:49 |
| 29 | GSK-Biostatistics/beastt 1 R Apache License 2.0 2024-06-07 08:36:40 |
| 30 | AstraZeneca/biomedical-kg-topological-imbalance Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022) drug-discovery, drug-discovery-knowledge-graph, knowledge-graph, knowledge-graph-completion, target-prediction 14 Jupyter Notebook Apache License 2.0 2024-06-07 07:59:07 |
| 31 | bedapub/splicekit splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq 14 3 Python 2024-06-07 07:30:05 |
| 32 | AstraZeneca/jazzy Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules. 71 6 Python Other 2024-06-06 23:28:22 |
| 33 | genentech/beignet A standard library for biological research. 11 4 Python MIT License 2024-06-06 18:16:34 |
| 34 | Merck/wpgsd Weighted parametric group sequential design 1 2 R GNU General Public License v3.0 2024-06-06 18:14:32 |
| 35 | insightsengineering/scda.test Package that runs tests for tern and scda clinical-trials, graphs, listings, nest, outputs, r, tables 2 R Other 2024-06-06 16:33:51 |
| 36 | Bayer-Group/BayerCLAW BayerCLAW workflow orchestration system for AWS aws, bayer-not-classified, bayer-reg-none, beat-not-applicable, pipeline, workflow 18 8 Python BSD 3-Clause "New" or "Revised" License 2024-06-06 15:45:06 |
| 37 | Gilead-BioStats/gsm Good Statistical Monitoring R Package 33 8 R Apache License 2.0 2024-06-06 14:03:31 |
| 38 | Sanofi-Public/LipoBART 3 Jupyter Notebook Other 2024-06-06 13:50:10 |
| 39 | insightsengineering/teal.modules.hermes RNA-seq analysis modules to add to a teal application modules, r, rna-seq-analysis, shiny 7 1 R Other 2024-06-06 13:16:21 |
| 40 | biosustain/datacatalog-documentation 2 2024-06-06 12:29:37 |
| 41 | insightsengineering/teal.modules.general General Purpose Teal Modules general-purpose, modules, nest, r, shiny 9 6 R Other 2024-06-06 12:24:10 |
| 42 | insightsengineering/teal.goshawk Modules that produce web interfaces through which longitudinal visualizations can be dynamically modules, nest, r 3 2 R Other 2024-06-06 12:21:06 |
| 43 | johnsonandjohnson/vxnaid Vxnaid™ is a digital platform that supports correct vaccine administration & efficient vaccination campaigns. 1 1 Kotlin Apache License 2.0 2024-06-06 12:19:14 |
| 44 | insightsengineering/teal.reporter Create and preview reports with Shiny modules nest, r, reporting, shiny 8 8 R Other 2024-06-06 11:59:45 |
| 45 | biosustain/dgfreg Regression models of biochemical formation energies 2 Jupyter Notebook MIT License 2024-06-06 11:54:56 |
| 46 | biosustain/dsp_nf-metagenomics Shotgun metagenomics pipeline to process microbiome samples metagenomics, nextflow-pipeline 1 Shell GNU General Public License v3.0 2024-06-06 11:48:39 |
| 47 | insightsengineering/tern.mmrm Create MMRM TLGs using lme4 and tern graphs, listings, r, statistical-engineering, tables 6 1 R 2024-06-06 11:43:17 |
| 48 | EliLillyCo/ErlWoodKNIME This is the LRL_ErlWoodKNIME Repo lrl 4 5 Java GNU General Public License v3.0 2024-06-06 11:38:11 |
| 49 | insightsengineering/tern.rbmi Create TLGs using rbmi and tern graphs, listings, r, tables 3 1 R Other 2024-06-06 11:34:18 |
| 50 | insightsengineering/teal.osprey Community efforts to collect teal modules for TLGs defined in the osprey package modules, nest, r 5 2 R Other 2024-06-06 11:17:18 |
| 51 | johnsonandjohnson/openmrs-distro-vxnaid Cintains the Vxnaid distribution application for OpenMRS. It has been tailored for quick-evaluation of Vxnaid features and as a base for production builds. 2 Shell Other 2024-06-06 10:09:43 |
| 52 | insightsengineering/verdepcheck An R package that tests your R package against the min/max versions of specified dependencies check, devtools, r, testing, utils 1 R Other 2024-06-06 09:39:05 |
| 53 | johnsonandjohnson/openmrs-module-vxnaid-biometric Module for OpenMRS to provide REST APIs to retrieve configurations, register and match participants using bio-graphich and biometric information and, match a participant, create/update visit and creating encounters. 1 Java Other 2024-06-06 08:35:14 |
| 54 | servierhub/top-life-sciences Top Life Sciences open-source software ai, awesome, awesome-list, awesome-lists, bioinformatics, biology, biology-ai, computational-biology, computational-chemistry, ebiology, life-sciences, lifescience, lifesciences, pharma, pharmaceuticals, servier 1 2024-06-06 07:56:59 |
| 55 | nn-dma/generate-verification-report Takes metadata and test results as input and generates a verification report as output. 1 Go 2024-06-06 06:29:54 |
| 56 | AstraZeneca/persist-seq-galaxy-tools-setup Python 2024-06-06 04:09:28 |
| 57 | Merck/metalite.sl An R package designed for the analysis & reporting of subject baseline characteristics in clinical trials. R GNU General Public License v3.0 2024-06-06 03:12:19 |
| 58 | insightsengineering/ci-images Insights Engineering Container Images docker, images, r, reproducibility, rocker 10 2 R 2024-06-05 19:44:30 |
| 59 | insightsengineering/tlg-catalog A catalog of Tables, Listings and Graphs (TLGs) created with NEST R packages 17 4 JavaScript Other 2024-06-05 18:04:25 |
| 60 | insightsengineering/biomarker-catalog Biomarker Analysis Templates of Tables And Graphs 📊 5 SCSS 2024-06-05 17:34:30 |
| 61 | Novartis/bamdd Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms bayesian, brms, clinical, stan 14 2 TeX GNU General Public License v2.0 2024-06-05 16:45:28 |
| 62 | Bayer-Group/react-color-a11y React higher-order component to automatically enforce color accessibility 5 1 TypeScript MIT License 2024-06-05 16:08:52 |
| 63 | Bayer-Group/MOCCAbeat-undefined 1 1 Python MIT License 2024-06-05 15:46:04 |
| 64 | insightsengineering/r.pkg.template An opinionated R package template with CI/CD built-in git, github-actions, r, template 31 7 Shell Other 2024-06-05 15:37:35 |
| 65 | insightsengineering/chevron Standard TLGs For Clinical Trials Reporting clinical-trials, graphs, listings, nest, r, reporting, tables 7 R Other 2024-06-05 14:57:39 |
| 66 | regeneron-mpds/wipperman_digital_wearable_insole_ML Jupyter Notebook Other 2024-06-05 14:10:40 |
| 67 | AstraZeneca/MVDA_exploration_tools Multivariate data analysis (MVDA) exploration tool is a Python library utilizing the scikit-learn library for partial least squares (PLS) and principal components analysis (PCA). 4 1 Jupyter Notebook Apache License 2.0 2024-06-05 13:09:10 |
| 68 | insightsengineering/rbmi Reference based multiple imputation R package 13 4 R Other 2024-06-05 12:08:47 |
| 69 | insightsengineering/teal.modules.bsafe Teal modules for bsafe clinical-trials, r 1 R Other 2024-06-05 07:48:32 |
| 70 | Merck/forestly Interactive forest plot for adverse events analysis 10 3 R GNU General Public License v3.0 2024-06-05 03:40:44 |
| 71 | insightsengineering/tern Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials clinical-trials, graphs, listings, nest, outputs, r, tables 71 17 R Other 2024-06-04 22:41:07 |
| 72 | AstraZeneca/runnable Runnable 38 4 Python Apache License 2.0 2024-06-04 20:42:58 |
| 73 | insightsengineering/cardx R Package to Supplement ARD Functions Found in {cards} r 1 R Other 2024-06-04 18:09:50 |
| 74 | pfizer-opensource/graphs-renderer A javascript library that provides rendering capabilities for CFD, scatterplot and Histogram graphs. It uses d3js for graph rendering. 2 1 JavaScript Apache License 2.0 2024-06-04 16:33:09 |
| 75 | AstraZeneca/KAZU Fast, world class biomedical NER biomedical-text-mining, natural-language-processing, nlp 61 4 Python Apache License 2.0 2024-06-04 16:07:59 |
| 76 | biosustain/pseudobatch The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, the data can be analysed as if it was obtained from a batch fermentation process. The Pseudobatch transformation is especially useful for fed-batch processes where samples where drawn from the bioreactor. fed-batch, fermentation, fermentation-process, microbiology 4 Jupyter Notebook MIT License 2024-06-04 14:38:25 |
| 77 | insightsengineering/r-verdepcheck-action Github Action to check if R package works correctly with minimum version of dependencies installed actions, github-actions, r 1 1 R Apache License 2.0 2024-06-04 14:05:31 |
| 78 | insightsengineering/formatters A framework for creating listings of raw data that include specialized formatting, headers, footers, referential footnotes, and pagination. format, matrix, r, table 15 5 R Other 2024-06-04 13:24:58 |
| 79 | Sanofi-IADC/whispr Open source event, comment and alert processing hub created by Sanofi IADC 88 8 TypeScript MIT License 2024-06-04 12:01:03 |
| 80 | cbmr-data/cbmr-data.github.io CBMR Documentation JavaScript Creative Commons Attribution 4.0 International 2024-06-04 10:35:04 |
| 81 | Roche/pyreadstat Python package to read sas, spss and stata files into pandas data frames. It is a wrapper for the C library readstat. conversion, pandas-dataframe, python, readstat, sas7bdat, spss, stata-files 303 55 C Other 2024-06-04 09:55:07 |
| 82 | NovoNordisk-OpenSource/bifrost-open-telemetry-dotnet-exporter Extension methods for easy instrumentation of Open Telemetry exporters to Bifrost 2 1 C# BSD 3-Clause "New" or "Revised" License 2024-06-04 08:13:35 |
| 83 | Boehringer-Ingelheim/dv.upcoming 2024-06-04 08:06:19 |
| 84 | Merck/CEEDesigns.jl A decision-making framework for the cost-efficient design of experiments, balancing the value of acquired experimental evidence and incurred costs. decision-making, experimental-design, julia-language 7 1 Julia Other 2024-06-03 23:31:59 |
| 85 | Sanofi-IADC/glisten Feedback component plugin for whispr dashboard-component, feedbacks 6 5 Vue MIT License 2024-06-03 19:13:23 |
| 86 | astrazeneca-cgr-publications/OncMTR OncMTR: Oncology-specific MTR score 1 Jupyter Notebook Mozilla Public License 2.0 2024-06-03 18:25:23 |
| 87 | Merck/simtrial Clinical trial simulation for time-to-event endpoints 15 8 R GNU General Public License v3.0 2024-06-03 17:42:13 |
| 88 | Bayer-Group/MOCCA-frontendbeat-undefined 1 Python MIT License 2024-06-03 16:04:14 |
| 89 | insightsengineering/cards CDISC Analysis Results Data analysis, cdisc, dataset, r 22 R 2024-06-03 15:23:42 |
| 90 | johnsonandjohnson/openmrs-module-visits Module for OpenMRS to allow users to manage scheduled visits. It allows to schedule different types of visits, save visit data in the system and manage saved visits. 1 Java Other 2024-06-03 13:55:12 |
| 91 | MolecularAI/aizynthfinder A tool for retrosynthetic planning astrazeneca, chemical-reactions, cheminformatics, monte-carlo-tree-search, neural-networks, reaction-informatics 548 125 Python MIT License 2024-06-03 13:34:33 |
| 92 | biosustain/msdap (forked from: ftwkoopmans/msdap) MS-DAP: downstream analysis pipeline for quantitative proteomics 1 R GPL-3.0 license 2024-06-03 13:28:36 |
| 93 | biosustain/incawrapper A python wrapper for Metabolic Flux Analysis (MFA) using INCA with additional functionalities flux, metabolism, modeling 2 Python MIT License 2024-06-03 12:38:19 |
| 94 | johnsonandjohnson/openmrs-distro-cfl Connect For Life™ tailored distribution for OpenMRS. It is a communication platform to engage with patients remotely and to provide continuity of care with proven implementation feasibility in HIV, TB, COVID-19 case surveillance and vaccination programs. 3 JavaScript Other 2024-06-03 12:33:50 |
| 95 | johnsonandjohnson/openmrs-module-cfl-core Module for OpenMRS to allow Connect For Life™ specific functionalities. It contains person dashboard modifications, customer dashboard widgets, person status label or customer registration form for person. Java Other 2024-06-03 11:46:04 |
| 96 | Bayer-Group/ica-parser Python package for parsing and processing JSON output files from Illumina Connected Annotations bayer-reg-none, beat-not-applicable, open-source 1 Python BSD 3-Clause "New" or "Revised" License 2024-06-03 11:45:43 |
| 97 | biosustain/dsp_nfcore_taxprofiler Taxonomica profiling using nf-core/taxprofiler pipeline Nextflow GNU Affero General Public License v3.0 2024-06-03 11:34:41 |
| 98 | insightsengineering/thevalidatoR Github Action that generates R Package Validation documentation 🏁 github-actions, r, r-package-automation, validation 54 5 R MIT License 2024-06-03 10:45:44 |
| 99 | Boehringer-Ingelheim/TSO500R (forked from: eastgenomics/TSO500R) R package for data analysis with CombinedVariantOutput.tsv data 3 2 R MIT license 2024-06-03 09:23:55 |
| 100 | insightsengineering/goshawk Functions that plot and summarize biomarkers/labs of interest plot, r, summarization 5 1 R Other 2024-06-03 08:15:22 |
| 101 | Merck/BioPhi BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design. antibody, humanization, humanness, oasis, sapiens 129 44 Python MIT License 2024-06-03 07:17:18 |
| 102 | Merck/r2rtf Easily Create Production-Ready Rich Text Format (RTF) Table and Figure 76 19 R GNU General Public License v3.0 2024-06-03 01:28:44 |
| 103 | Bayer-Group/paquo PAthological QUpath Obsession - QuPath and Python conversations digital-pathology, python, qupath 100 16 Python GNU General Public License v3.0 2024-06-02 18:21:27 |
| 104 | NovoNordisk-OpenSource/decentralized-tech-radar Decentralized Tech Radar - ITU ISE 2024 Collaboration 7 3 JavaScript GNU Affero General Public License v3.0 2024-06-01 18:41:26 |
| 105 | Agile-Arch-Angels/decentralized-tech-radar_dev (forked from: NovoNordisk-OpenSource/decentralized-tech-radar) Decentralized Tech Radar - ITU ISE 2024 Collaboration - Development Fork 5 1 JavaScript AGPL-3.0 license 2024-06-01 18:41:24 |
| 106 | servierhub/top-pharma50 Top open source software from the top 50 pharmaceutical companies ai, awesome, awesome-list, awesome-lists, bioinformatics, biology-ai, computational-biology, computational-chemistry, ebiology, life-sciences, lifescience, lifesciences, pharma, pharmaceuticals, servier 1 2024-06-01 15:52:09 |
| 107 | servierhub/top-pharma-fr Top open source software from French pharmaceutical companies ai, awesome, awesome-list, awesome-lists, bioinformatics, biology-ai, computational-biology, computational-chemistry, ebiology, france, french, life-sciences, lifescience, lifesciences, pharma, pharmaceuticals, servier 1 2024-06-01 15:09:59 |
| 108 | servierhub/top-prisme PRISME Forum members on GitHub awesome, awesome-list, awesome-lists, biotechnology, pharma, pharmaceuticals, servier 1 2024-06-01 14:54:07 |
| 109 | Bayer-Group/genie-parser Python package for processing AACR GENIE data bayer-reg-none, beat-not-applicable, open-source 1 Jupyter Notebook BSD 3-Clause "New" or "Revised" License 2024-06-01 12:26:28 |
| 110 | rdkit/rdkit-js A powerful cheminformatics and molecule rendering toolbelt for JavaScript, powered by RDKit . cheminformatics, drug-discovery, javascript, molecule, molecule-viewer, molecule-visualization, node-js, npm, rdkit, react, wasm 123 35 Dockerfile BSD 3-Clause "New" or "Revised" License 2024-06-01 09:54:52 |
| 111 | Merck/MolPROP fuses molecular language and graph representation for property prediction 4 1 Python 2024-06-01 00:14:18 |
| 112 | biosustain/pankb_db Python MIT License 2024-05-31 19:31:13 |
| 113 | Sanofi-Public/crai 1 Python 2024-05-31 17:21:37 |
| 114 | Roche/neuro-meeglet-paper Code for spectral analysis of EEG using Morlet wavelets based on the frequency-based parametrization presented in [Bomatter et al 2023, bioRxiv](http://www.biorxiv.org/content/10.1101/2023.12.15.571864v5) 7 Python Apache License 2.0 2024-05-31 13:21:32 |
| 115 | biosustain/dsp_nf-msdap Nextflow pipeline for MS-DAP, a downstream pipeline to generate statistical reports for MS data downstream-analysis, nextflow-pipeline, proteomics R GNU General Public License v3.0 2024-05-31 11:36:18 |
| 116 | bedapub/bksnake Public version of bksnake - biokit snakemake - bulk RNASeq Snakemake workflow 2 Python 2024-05-31 10:37:31 |
| 117 | Bayer-Group/BIC-BReasybayer-not-classified, bayer-reg-none, beat-not-applicable 6 3 R GNU General Public License v3.0 2024-05-31 10:12:27 |
| 118 | Bayer-Group/xtbfbeat-undefined 1 1 Python BSD 3-Clause "New" or "Revised" License 2024-05-31 07:34:06 |
| 119 | Amgen/GUMPS Jupyter Notebook Other 2024-05-30 13:23:33 |
| 120 | Roche/the-ambassador The Ambassador helps users of coding platforms to create findable, well maintained, properly documented and secure projects. It's purpose is to promote creating Open Source and InnerSource software, that others can rely on. It measures project scores (criticality, activity, scorecard), proactively advises projects. inner-source, innersource, innersource-advisor, open-source, scorecard, scores, software-quality 18 Kotlin Apache License 2.0 2024-05-30 10:56:41 |
| 121 | Bayer-Group/pybalancebeat-undefined 1 Jupyter Notebook BSD 3-Clause "New" or "Revised" License 2024-05-30 09:51:48 |
| 122 | bioinform/somaticseq An ensemble approach to accurately detect somatic mutations using SomaticSeq cancer-genomics, somatic-variants 189 53 Python BSD 2-Clause "Simplified" License 2024-05-30 07:55:34 |
| 123 | genentech/spex_frontend 1 2 JavaScript MIT License 2024-05-30 02:01:50 |
| 124 | genentech/TraCSED Jupyter Notebook MIT License 2024-05-29 22:04:30 |
| 125 | molecularinformatics/roshambo 9 Jupyter Notebook GNU General Public License v3.0 2024-05-29 21:23:53 |
| 126 | genentech/modsculpt Direct and Indirect Additive Modeling with Model Sculpting R 2024-05-29 18:37:35 |
| 127 | AstraZeneca/peptide-tools Programs to calculate phys-chem properties of synthetic peptides and proteins: isoelectric point and extinction coefficients. 16 4 Python Apache License 2.0 2024-05-29 15:52:06 |
| 128 | Boehringer-Ingelheim/eslint-config This is the shared eslint configuration used at Boehringer Ingelheim for code styling eslint, eslint-config, eslintrc, hacktoberfest 3 1 JavaScript MIT License 2024-05-29 15:14:05 |
| 129 | MolecularAI/aizynthtrain Tools to train synthesis prediction models 21 6 Python Apache License 2.0 2024-05-29 14:47:11 |
| 130 | bi-compbio/IST IST code 2024-05-29 14:44:50 |
| 131 | MolecularAI/Chemformer 188 34 Python Apache License 2.0 2024-05-29 14:43:33 |
| 132 | genentech/HLApollo Dockerfile Other 2024-05-29 03:34:24 |
| 133 | Novartis/scar scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics cite-seq, crispr-screen, denoising-algorithm, generative-model, machine-learning, probabilistic-graphical-models, pytorch, single-cell-rna-seq, variational-autoencoder 44 4 Python 2024-05-28 21:20:32 |
| 134 | AstraZeneca/metabolic_classifier Jupyter Notebook 2024-05-28 14:53:48 |
| 135 | Novartis/pisces PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon. bioinformatics, bioinformatics-pipeline, rnaseq, rnaseq-pipeline, salmon, transcriptomics 28 3 Python Apache License 2.0 2024-05-28 13:38:43 |
| 136 | AstraZeneca/mcpl.github.io HTML 2024-05-28 09:53:31 |
| 137 | Roche/WUCSS The WUCSS module is part of a Python-based workflow for analyzing in vivo rodent electrophysiology data and was developed by the Neural Circuits Lab, part of Neuroscience and Rare Diseases (NRD) at Roche. The module uses machine learning techniques to further classify rodent sleep into light, deep and REM sleep. Python Apache License 2.0 2024-05-28 08:39:33 |
| 138 | Boehringer-Ingelheim/terrarium 2024-05-28 08:09:42 |
| 139 | Roche/foxops Templating for Git Repositories 39 6 Python Apache License 2.0 2024-05-27 19:22:11 |
| 140 | NovoNordisk-OpenSource/critical-path Implementation of the Critical Path method 3 C# MIT License 2024-05-27 12:14:58 |
| 141 | insightsengineering/scribe System Compatibility Reports for Install & Build Evaluation Go Other 2024-05-27 11:50:55 |
| 142 | MolecularAI/reaction_utils Utilities for working with datasets of chemical reactions, reaction templates and template extraction. 56 7 Python Apache License 2.0 2024-05-27 11:35:22 |
| 143 | AstraZeneca/MCPL Official implementation for "An image is worth multiple words: discovering object level concepts using multi-concepts prompts learning" [ICML 2024]] 3 1 Python Apache License 2.0 2024-05-27 10:25:57 |
| 144 | insightsengineering/julia-images Insights Engineering Julia Images docker, images, julia, reproducibility Shell 2024-05-25 19:47:22 |
| 145 | genentech/iterative-perturb-seq Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors 30 2 Jupyter Notebook Apache License 2.0 2024-05-25 02:27:44 |
| 146 | genentech/data-detective 4 1 Python Other 2024-05-25 00:42:35 |
| 147 | johnsonandjohnson/openmrs-module-sms Module for OpenMRS to allow the integration with the API of SMS providers. Enables sending outgoing messages, as well as to receive inbound messages. 1 Java Other 2024-05-24 07:09:30 |
| 148 | Merck/metalite.ae An R package for standard adverse events analysis cdisc, clinical-trials, metadata, r-package 14 3 R GNU General Public License v3.0 2024-05-24 01:49:26 |
| 149 | insightsengineering/random.cdisc.data Create random CDISC data cdisc, dataset, r 27 5 R Other 2024-05-24 00:54:03 |
| 150 | insightsengineering/dunlin Tools for Clinical Trial Data Wrangling 3 R Other 2024-05-24 00:48:27 |
| 151 | insightsengineering/teal.widgets shiny widgets for teal applications nest, r, shiny, widgets 4 4 R Other 2024-05-24 00:48:10 |
| 152 | insightsengineering/teal.logger Logging setup for the teal family of packages logging, nest, r, utilities 4 2 R Other 2024-05-24 00:44:30 |
| 153 | Gilead-IT-GCDM-PDM/Open-SMART-PMI Python MIT License 2024-05-23 22:28:06 |
| 154 | Sanofi-Public/PMCB-SignacX Annotation of single-cell data cc-us03b0096 2 HTML GNU General Public License v3.0 2024-05-23 20:00:43 |
| 155 | servierhub/shuju (forked from: RomualdRousseau/ShuJu) Collection of various algorithms implemented in Java covering domains such as mathematics and data. data-science, mathematics, servier Java GPL-3.0 license 2024-05-23 19:19:37 |
| 156 | servierhub/any2json (forked from: RomualdRousseau/Any2Json) Framework to manipulate semi structured documents and extract data from them excel, semi-structured-data, servier, table-extraction Java GPL-3.0 license 2024-05-23 19:19:17 |
| 157 | rdkit/rdkit-structure-renderer JavaScript package for interactive rendering of 2D chemical structures in the browser. 18 2 HTML Other 2024-05-23 17:07:13 |
| 158 | insightsengineering/teal.code Code storage and execution class for teal applications nest, r, shiny 9 7 R Other 2024-05-23 14:33:50 |
| 159 | johnsonandjohnson/openmrs-module-cfl-default Module for OpenMRS with demonstration of configuration capabilities of Connect For Life™. Java Other 2024-05-23 13:44:30 |
| 160 | johnsonandjohnson/openmrs-module-etllite Module for OpenMRS to allow Extract, Transform and Load (ETL) functionalities. It is needed to extract data from relational databases, transform it using Velocity templates, and then load it into an OpenMRS system using the application provided Spring services. 1 Java Other 2024-05-23 12:27:33 |
| 161 | johnsonandjohnson/openmrs-module-messages Module for OpenMRS to allow receiving messages like call or sms, from a health facility. Messages will be delivered directly to patients and the health facility will be able to schedule the messages. 4 Java Other 2024-05-23 11:53:18 |
| 162 | johnsonandjohnson/openmrs-module-cfl-charts Module for OpenMRS to allow the creation visualisations from OpenMRS reports within OpenMRS. Enables interaction with the data through filters and allows export of the data used for the visualizations. TypeScript Other 2024-05-23 11:39:41 |
| 163 | MolecularAI/pysmilesutils Utilities for working with SMILES based encodings of molecules for deep learning (PyTorch oriented) 67 18 Python Apache License 2.0 2024-05-23 09:54:27 |
| 164 | biosustain/GEM-Exometabolome Pipeline for the integration of exometabolomic data into GEM analysis and interpretation MATLAB MIT License 2024-05-23 09:23:07 |
| 165 | johnsonandjohnson/openmrs-module-callflows Module for OpenMRS to allow the integration with the API of IVR providers. Enables sending interactive voice response calls to patients. 1 2 Java Other 2024-05-23 08:58:08 |
| 166 | johnsonandjohnson/openmrs-owa-cfl Module for OpenMRS to allow the CfL User interface Open Web Apps. 1 2 TypeScript Other 2024-05-23 07:29:02 |
| 167 | insightsengineering/teal.transform Reproducible transform and merge module for teal applications merge, modules, nest, r, transform 3 2 R Other 2024-05-23 03:40:13 |
| 168 | genentech/SpatialQPFs HTML 2024-05-22 21:57:06 |
| 169 | servierhub/libgh (forked from: HubTou/libgh) GitHub scraping tool and library Python BSD-3-Clause license 2024-05-22 21:44:59 |
| 170 | Roche/spock-geb-quickstart A quickstart for frontend tests. HTML Apache License 2.0 2024-05-22 11:51:13 |
| 171 | pfizer-opensource/carver Clinical Analysis Reporting and Visualization Ensemble (in R) R Apache License 2.0 2024-05-22 11:34:39 |
| 172 | genentech/spex_spatial_transcriptomics Jupyter Notebook 2024-05-22 06:51:47 |
| 173 | insightsengineering/tern.gee Create TLGs using Generalized Estimating Equations (GEE) 8 2 R 2024-05-21 15:29:54 |
| 174 | NovoNordisk-OpenSource/excalidraw (forked from: excalidraw/excalidraw) Virtual whiteboard for sketching hand-drawn like diagrams TypeScript MIT license 2024-05-21 15:16:06 |
| 175 | insightsengineering/teal.data Data model for teal applications data-model, nest, r 8 7 R Other 2024-05-21 14:17:07 |
| 176 | AstraZeneca/kgem-in-drug-discovery Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022) drug-discovery, drug-discovery-knowledge-graph, knowledge-graph, knowledge-graph-embedding-models, knowledge-graph-embeddings, target-prediction 29 6 Python Apache License 2.0 2024-05-21 08:58:54 |
| 177 | bedapub/HBVouroboros HBVouroboros automates sequencing-based HBV genotyping and expression profiling bioinformatics, expression, genotyping, hbv, snakemake, snakemake-workflow 2 1 Python GNU General Public License v3.0 2024-05-21 05:55:11 |
| 178 | johnsonandjohnson/openmrs-owa-vxnaid Module for OpenMRS to allow the Vxnaid User interface Open Web Apps. TypeScript Other 2024-05-20 06:39:58 |
| 179 | AstraZeneca/multimodal-python-course The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science 5 Jupyter Notebook Apache License 2.0 2024-05-19 14:34:31 |
| 180 | MolecularAI/reaction-graph-link-prediction 5 Python Apache License 2.0 2024-05-18 10:29:16 |
| 181 | Novartis/scOTGM This is the official codebase for "sc-OTGM: Single-Cell Perturbation Modeling by Solving Optimal Mass Transport on the Manifold of Gaussian Mixtures" Jupyter Notebook GNU General Public License v3.0 2024-05-17 20:19:41 |
| 182 | Novartis/WATCH An R-repository to implement a double robust version of the WATCH workflow published in Sechidis et al. (2024) R MIT License 2024-05-17 19:50:26 |
| 183 | johnsonandjohnson/openmrs-module-cfl Module for OpenMRS to allow a Connect For Life™ Distribution. The module which contains metadata, customizations and anything which is required by the Connect For Life™ Distribution and is not or is not supposed to be compatible with other distributions. 1 Java Other 2024-05-17 14:37:43 |
| 184 | johnsonandjohnson/openmrs-esm-admin-tools (forked from: openmrs/openmrs-esm-admin-tools) Administrative microfrontends for OpenMRS 3.0 1 TypeScript specific 2024-05-17 12:14:00 |
| 185 | insightsengineering/staged-dependencies-action Github Action to implement R development stages for package development github-actions, r, renv, staged-dependencies, system-dependencies 3 2 R Apache License 2.0 2024-05-17 12:06:44 |
| 186 | biosustain/Growth-coupling-suite A constraint-based metabolic model-based workflow for computing and analyzing microbial strain design which couple a target reaction to growth 2 Python MIT License 2024-05-17 08:43:35 |
| 187 | bedapub/PMDA-Summer-School (forked from: LuisaMohr/PMDA-Summer-School) Public website of Roche PMDA Summer School 2 2 1 GPL-3.0 license 2024-05-17 08:14:35 |
| 188 | Merck/boxly Interactive box plot for clinical trial analysis 13 1 R GNU General Public License v3.0 2024-05-17 04:18:15 |
| 189 | bedapub/ribiosUtils The ribiosUtils package, a swiss-army knife for bioinformatics and computational biology tasks in drug discovery 1 C 2024-05-16 13:31:31 |
| 190 | insightsengineering/bsafe TBD clinical-trials, r 1 R Other 2024-05-16 09:45:02 |
| 191 | Bayer-Group/text-to-sql-epi-ehr-naacl2024 Code for Retrieval augmented text-to-SQL generation for epidemiological question answering using electronic health records generative-ai, llm, rag, text-generation, text-to-sql 3 Python MIT License 2024-05-15 11:39:54 |
| 192 | Roche/neuro-green This project contains the code for a deep learning architecture to analyze EEG data. 13 Python Apache License 2.0 2024-05-15 08:18:23 |
| 193 | pfizer-opensource/pharma-hands-on-exercises Rmd training files for getting started with R. Introduces R concepts for data manipulation, visualization and other topics using PhUSE synthetic data. R Creative Commons Attribution Share Alike 4.0 International 2024-05-14 19:27:09 |
| 194 | insightsengineering/coverage-action Github Action that generates a coverage summary using a Cobertura XML report coverage, github-actions 16 5 MIT License 2024-05-14 15:23:20 |
| 195 | AC-BO-Hackathon/ac-bo-hackathon.github.io (forked from: materials-data-facility/llm-hackathon) 10 67 1 HTML MIT license 2024-05-14 15:01:42 |
| 196 | GSK-Biostatistics/tfrmtbuilder 5 R Apache License 2.0 2024-05-13 16:26:14 |
| 197 | Sanofi-Public/spatialone-pipeline Spatial One bioinformatics, python, spatial-biology, spatialomics 3 Python Other 2024-05-13 15:43:29 |
| 198 | Sanofi-Public/PMCB-CellBridge PMCB-SCB scRNA-seq pipeline 2 HTML 2024-05-13 15:42:39 |
| 199 | Boehringer-Ingelheim/Personalis-io Read Personalis datasets into MultiAssayExperiment objects bioconductor, multiassayexperiment, personalis, real-world-evidence 1 R GNU General Public License v3.0 2024-05-13 14:45:48 |
| 200 | Boehringer-Ingelheim/prettier-config This is the shared prettier configuration used at Boehringer Ingelheim for code formatting. prettier, prettier-config, prettierrc 13 JavaScript MIT License 2024-05-13 12:09:08 |