TOPICS.md

What topics are covered by open source software from the top 50 pharmaceutical companies

This is an automatically generated¹ list of topics covered by open source software from the world's 2023 top 50 pharmaceutical companies² that are present on GitHub. It will be periodically refreshed from these GitHub accounts repositories.

Unleash serendipity to discover new software from the accounts and repositories we selected!

You can also access the ranked listing of open source software they share, what they have updated lately, and which topics are covered by these software.

Ranked by frequence

Rank	Count	Topic
1	74	r
2	23	nest
3	18	python
3	18	deep-learning
4	16	github-actions
4	16	beat-undefined
5	15	shiny
6	14	clinical-trials
7	12	bioinformatics
7	12	machine-learning
7	12	beat-not-applicable
8	11	linked-data
8	11	rdf
9	10	bayer-reg-none
9	10	elasticsearch
9	10	data-catalog
9	10	cloud-native
9	10	fair
9	10	triplestore
9	10	shacl
9	10	fair-data
9	10	findable
9	10	data-catalogue
9	10	colid
10	9	genomics
10	9	actions
11	8	cheminformatics
11	8	drug-discovery
11	8	knowledge-graph
11	8	biology
11	8	astrazeneca
12	7	cdisc
12	7	r-package
12	7	modules
12	7	tables
12	7	bayer-not-classified
12	7	servier
13	6	graphs
13	6	listings
13	6	hta
13	6	health-economic-evaluation
13	6	computational-chemistry
13	6	pharma
13	6	awesome-list
14	5	pytorch
14	5	visualization
14	5	chemistry
14	5	pharmaceuticals
14	5	rstats
14	5	health-economics
14	5	ai
14	5	reinforcement-learning
14	5	denovo-design
15	4	survival-analysis
15	4	julia-language
15	4	antibody
15	4	docker
15	4	data-science
15	4	open-source
15	4	self-supervised-learning
15	4	neural-networks
15	4	parser
15	4	digital-pathology
15	4	awesome
15	4	awesome-lists
16	3	nodejs
16	3	bayesian
16	3	transcriptomics
16	3	rna-seq
16	3	react
16	3	julia
16	3	outputs
16	3	statistical-engineering
16	3	testing
16	3	coverage
16	3	synthetic-data
16	3	evidence-synthesis
16	3	simulation
16	3	convolutional-neural-networks
16	3	drug-discovery-knowledge-graph
16	3	natural-language-processing
16	3	contrastive-learning
16	3	graph
16	3	recommender-system
16	3	drug-design
16	3	transfer-learning
16	3	jupyter-notebook
16	3	chemoinformatics
16	3	apm-0007239
16	3	metabolism
16	3	biopython
16	3	computational-biology
16	3	life-sciences
16	3	lifescience
16	3	lifesciences
16	3	ebiology
16	3	biology-ai
17	2	swift
17	2	omics
17	2	sql
17	2	computer-vision
17	2	javascript
17	2	components
17	2	clinical
17	2	stan
17	2	dataviz
17	2	scrna-seq
17	2	rdkit
17	2	decision-making
17	2	sapiens
17	2	humanness
17	2	metadata
17	2	differential-equations
17	2	conversion
17	2	sonarqube
17	2	webapp
17	2	reporting
17	2	utils
17	2	devtools
17	2	check
17	2	images
17	2	reproducibility
17	2	template
17	2	analysis
17	2	dataset
17	2	validation
17	2	pii
17	2	presidio
17	2	repository
17	2	yaml
17	2	bioconductor
17	2	proteins
17	2	shiny-apps
17	2	cost-effectiveness
17	2	cost-effectiveness-analysis
17	2	somatic-variants
17	2	cancer-genomics
17	2	gruntworks
17	2	target-prediction
17	2	biomedical-text-mining
17	2	nlp
17	2	transformer
17	2	drug
17	2	smiles
17	2	graph-neural-network
17	2	polypharmacy
17	2	smiles-strings
17	2	deep-chemistry
17	2	artificial-intelligence
17	2	explainable-ai
17	2	explainable-ml
17	2	explainability
17	2	representation-learning
17	2	generative-ai
17	2	qsar
17	2	qsar-models
17	2	molecular-docking
17	2	tensorflow
17	2	keras
17	2	deeplearning
17	2	cc-us03b0096
17	2	confluence
17	2	nextflow-pipeline
17	2	proteomics
17	2	microbial-genomics
17	2	breseq
17	2	genomediff
17	2	hacktoberfest
17	2	eslint
17	2	prettier
17	2	bayesian-methods
17	2	clinical-trial
17	2	pharmaceutical-development
17	2	typescript
17	2	neural-network
17	2	golang
17	2	security
17	2	security-automation
17	2	security-tools
18	1	sensors
18	1	wearables
18	1	actigraphy
18	1	imu-sensor
18	1	genetic-algorithm
18	1	global-optimization
18	1	qsp
18	1	ode-model
18	1	metropolis-hastings
18	1	monte-carlo-sampling
18	1	biological-modeling
18	1	quantitative-systems-pharmacology
18	1	virtual-population
18	1	acceptance-rejection
18	1	research
18	1	box
18	1	researchkit
18	1	gwas
18	1	gds
18	1	phewas
18	1	mixed-model
18	1	genetic-associations
18	1	drug-target-prioritization
18	1	opencpu
18	1	oracledb
18	1	augmentation
18	1	histopathology
18	1	web
18	1	web-components
18	1	custom-elements
18	1	frond-end
18	1	r-programming
18	1	new-jersey
18	1	maternal-health
18	1	maternal-mortality
18	1	ios
18	1	networking
18	1	network-monitoring
18	1	urlsession
18	1	guppy
18	1	brms
18	1	generative-model
18	1	probabilistic-graphical-models
18	1	variational-autoencoder
18	1	single-cell-rna-seq
18	1	denoising-algorithm
18	1	cite-seq
18	1	crispr-screen
18	1	bioinformatics-pipeline
18	1	rnaseq
18	1	salmon
18	1	rnaseq-pipeline
18	1	scientific
18	1	h5ad
18	1	meta-analysis
18	1	historical-data
18	1	headless
18	1	audit
18	1	profiling
18	1	shinyloadtest
18	1	shinytest2
18	1	communication
18	1	oop
18	1	inheritance
18	1	shiny-modules
18	1	tidy-operators
18	1	data-visualization
18	1	sequential-data
18	1	epigenomics
18	1	pattern-search
18	1	interactive-machine-learning
18	1	autoencoder
18	1	unsupervised
18	1	moa
18	1	c-plus-plus
18	1	npm
18	1	molecule
18	1	wasm
18	1	node-js
18	1	molecule-visualization
18	1	molecule-viewer
18	1	experimental-design
18	1	oasis
18	1	humanization
18	1	package
18	1	packaging-tool
18	1	ectd
18	1	pharmaverse
18	1	optimization
18	1	reaction-network
18	1	strategic-planning
18	1	scientific-machine-learning
18	1	json
18	1	sparql
18	1	postgresql
18	1	spark
18	1	dynamical-systems
18	1	stochastic-processes
18	1	rlanguage
18	1	search-engine
18	1	docker-compose
18	1	web-application
18	1	search-algorithm
18	1	metaprogramming
18	1	multiple-testing
18	1	clinical-trial-design
18	1	multiplicity
18	1	rshiny-application
18	1	group-sequential-designs
18	1	graphical-approach
18	1	synthetic-biology
18	1	bidirectional-lstm
18	1	natural-products
18	1	deepbgc
18	1	pfam2vec
18	1	biosynthetic-gene-clusters
18	1	embeddings
18	1	language-model
18	1	bert
18	1	residence-time-distribution
18	1	process-development
18	1	catalog
18	1	slice
18	1	rna-seq-analysis
18	1	general-purpose
18	1	rocker
18	1	git
18	1	format
18	1	matrix
18	1	table
18	1	r-package-automation
18	1	plot
18	1	summarization
18	1	widgets
18	1	utilities
18	1	logging
18	1	merge
18	1	transform
18	1	data-model
18	1	renv
18	1	staged-dependencies
18	1	system-dependencies
18	1	traceability
18	1	covtracer
18	1	ubuntu
18	1	disk-space
18	1	release
18	1	simulation-engine
18	1	multistate-models
18	1	joint-models
18	1	pkgdown
18	1	installer
18	1	pip
18	1	action
18	1	dependency-management
18	1	spellcheck
18	1	website
18	1	clinical-trial-analysis
18	1	stable
18	1	low-code
18	1	license-checking
18	1	high-dimensional-data
18	1	nonparametrics
18	1	treatment-effects
18	1	biomarkers
18	1	pkgdown-template
18	1	conferences
18	1	abstracts
18	1	hex-stickers
18	1	roadmap
18	1	project-management
18	1	simulation-study
18	1	bayesian-dynamic-borrowing
18	1	psborrow2
18	1	hla
18	1	kir
18	1	immunogenetic
18	1	protein-sequences
18	1	protein-design
18	1	topological-data-analysis
18	1	lung
18	1	copd
18	1	minkowski-functionals
18	1	hrct
18	1	parametric-response-mapping
18	1	structural-biology
18	1	structure-prediction
18	1	architecture
18	1	component-architecture
18	1	snakemake
18	1	expression
18	1	hbv
18	1	genotyping
18	1	snakemake-workflow
18	1	randomization
18	1	design-of-experiments
18	1	pandas-dataframe
18	1	stata-files
18	1	spss
18	1	sas7bdat
18	1	readstat
18	1	innersource
18	1	software-quality
18	1	scorecard
18	1	scores
18	1	inner-source
18	1	innersource-advisor
18	1	gitlab
18	1	configuration-management
18	1	gitlab-api
18	1	configuration-as-code
18	1	high-throughput-sequencing
18	1	tmb
18	1	knowledge-graph-completion
18	1	knowledge-graph-embeddings
18	1	knowledge-graph-embedding-models
18	1	attention
18	1	patent-data
18	1	antibody-sequence
18	1	immunogenicity-prediction
18	1	antibody-design
18	1	quantum-chemistry
18	1	machinelearning
18	1	algorithm
18	1	knowledge
18	1	mapping
18	1	ontology
18	1	alignment
18	1	kg
18	1	ontology-alignment
18	1	biological-networks
18	1	segmentation
18	1	alan
18	1	echocardiography
18	1	visual-transformers
18	1	geometry
18	1	torch
18	1	geometric-deep-learning
18	1	drug-interaction
18	1	drug-pair
18	1	torchdrug
18	1	evaluation
18	1	personalization
18	1	rank
18	1	ranking
18	1	recommender
18	1	recall
18	1	recsys
18	1	metric
18	1	precision
18	1	mrr
18	1	rsquared
18	1	metrics
18	1	ner
18	1	entity-extraction
18	1	dictionary-based-ner
18	1	link-prediction
18	1	subgraph
18	1	node-embedding
18	1	graph-auto-encoder
18	1	ui
18	1	lime
18	1	explainable-artificial-intelligence
18	1	xai
18	1	shapley
18	1	shap
18	1	shapley-decomposition
18	1	explainable
18	1	shapley-value
18	1	shapley-q-value
18	1	shapley-additive-explanations
18	1	owen-value
18	1	ddi
18	1	drug-repurposing
18	1	relational-learning
18	1	gcn
18	1	drug-drug-interaction
18	1	drug-target-interactions
18	1	gnn
18	1	drug-combination
18	1	decagon
18	1	drug-synergy
18	1	synergy-prediction
18	1	tabular-data
18	1	multi-view-learning
18	1	statistics
18	1	forecasting
18	1	graph-algorithms
18	1	graphml
18	1	monte-carlo-tree-search
18	1	chemical-reactions
18	1	reaction-informatics
18	1	ml
18	1	molecule-generation
18	1	compchem
18	1	hyperparameter-optimization
18	1	optuna
18	1	clustering
18	1	matched-molecular-pair
18	1	non-additive-effects
18	1	deep-neural-networks
18	1	recurrent-neural-networks
18	1	siamese-neural-network
18	1	seq2seq
18	1	molecular-optimization
18	1	multi-property-optimization
18	1	scikit-learn
18	1	auto-ml
18	1	whole-genome-sequencing
18	1	non-coding-variants
18	1	spatialomics
18	1	spatial-biology
18	1	cc-6cl900
18	1	apm-0074337
18	1	cc-f40ccl2041
18	1	cms
18	1	viewer
18	1	headless-cms
18	1	feedbacks
18	1	dashboard-component
18	1	command-line
18	1	apm-0070143
18	1	ap059750
18	1	database
18	1	neo4j
18	1	graph-database
18	1	multi-omics
18	1	cell-painting
18	1	lrl
18	1	github
18	1	node
18	1	facts
18	1	metagenomics
18	1	microbiology
18	1	fermentation
18	1	fermentation-process
18	1	fed-batch
18	1	flux
18	1	modeling
18	1	downstream-analysis
18	1	angular
18	1	big-data
18	1	helm
18	1	scientific-computing
18	1	systems-biology
18	1	python3
18	1	thermodynamics
18	1	multivariate
18	1	tfa
18	1	cobrapy
18	1	fba
18	1	tmfa
18	1	multitfa
18	1	reconstruction-team
18	1	curve-fitting
18	1	growth-curves
18	1	flask
18	1	sqlalchemy
18	1	mongoengine
18	1	peewee
18	1	flask-extensions
18	1	microservices
18	1	rpc
18	1	python-3
18	1	circos-graphs
18	1	genome
18	1	python-wrapper
18	1	circos
18	1	biojs
18	1	d3js
18	1	angularjs
18	1	phylogenetic-trees
18	1	phylogenetics
18	1	neighbor-joining
18	1	gff3
18	1	genbank
18	1	sequence-ontology
18	1	eslint-config
18	1	eslintrc
18	1	real-world-evidence
18	1	multiassayexperiment
18	1	personalis
18	1	prettier-config
18	1	prettierrc
18	1	causal-inference
18	1	time-to-event
18	1	estimand
18	1	mcmc-methods
18	1	principal-stratification
18	1	weighting
18	1	extrapolation
18	1	pediatrics
18	1	tipping-point
18	1	prior-elicitation
18	1	bayesian-borrowing
18	1	cran
18	1	anomaly-detection
18	1	deep-features
18	1	drug-toxicity
18	1	one-class-classfiation
18	1	config
18	1	vscode
18	1	editorconfig
18	1	shared
18	1	i18n
18	1	ionic
18	1	veterinary
18	1	goat
18	1	social-entrepreneurship
18	1	making-more-health
18	1	bayesian-statistics
18	1	oncology
18	1	dose-escalation
18	1	trial-simulation
18	1	blrm
18	1	pathology
18	1	histology-images
18	1	aws
18	1	workflow
18	1	pipeline
18	1	qupath
18	1	text-generation
18	1	text-to-sql
18	1	rag
18	1	llm
18	1	credentials
18	1	artifactory
18	1	oidc
18	1	bayer-restricted
18	1	bayer-reg-undefined
18	1	bcf
18	1	toolkit
18	1	maps
18	1	geospatial
18	1	deprecated
18	1	openlayers
18	1	bayer
18	1	protein-structure
18	1	graphneuralnetwork
18	1	zero-shot-learning
18	1	few-shot-learning
18	1	large-scale-classification
18	1	text-classification
18	1	geoserver
18	1	styles
18	1	sld
18	1	geostyler
18	1	mocking
18	1	stubbing
18	1	golang-package
18	1	tutorial
18	1	workshop
18	1	go
18	1	protein
18	1	antibodies
18	1	tensorflow2
18	1	simclr
18	1	toy-dataset
18	1	conrec
18	1	attention-pooling
18	1	finegrained
18	1	represenation-learning
18	1	transformers
18	1	nlp-machine-learning
18	1	data-to-text
18	1	quaternion
18	1	graph-classification
18	1	neural-message-passing
18	1	graph-neural-networks
18	1	graph-representation-learning
18	1	hypercomplex
18	1	extended-connectivity-fingerprints
18	1	bayer-internal
18	1	safe-settings-testing
18	1	automation
18	1	scanning
18	1	devsecops
18	1	bayer-no-classification
18	1	beat-not-set
18	1	bayer-classification-required
18	1	bayer-reg-required
18	1	templates
18	1	sequence
18	1	biological-sequences
18	1	covalent-organic-frameworks
18	1	local-gaussian-processes
18	1	rinpharma
18	1	french
18	1	france
18	1	biotechnology
18	1	mathematics
18	1	excel
18	1	table-extraction
18	1	semi-structured-data
18	1	logs
18	1	teams
18	1	audit-logs
18	1	audit-log
18	1	troubleshooting
18	1	microsoft-teams
18	1	disconnects
18	1	csv-converter
18	1	data
18	1	data-mining
18	1	csv
18	1	data-engineering
18	1	csv-format
18	1	data-analysis
18	1	csv-reading
18	1	csv-parser
18	1	csv-reader
18	1	csv-parsing
18	1	routes
18	1	whois
18	1	route
18	1	network-visualization
18	1	network-analysis
18	1	tcp-ip
18	1	whois-lookup
18	1	network-security
18	1	whois-information
18	1	tcpip
18	1	shadow-it
18	1	tls
18	1	cryptography
18	1	certificate
18	1	certificates
18	1	domain
18	1	x509
18	1	expiration
18	1	expiry
18	1	security-scanner
18	1	tls-certificate
18	1	x509-parser
18	1	x509certificates
18	1	documentation
18	1	test-automation
18	1	cicd
18	1	gen-ai
18	1	assistant-cli

Footnotes

1. This page was generated with the topgh open source software on 2024-06-09 ↩

2. Independent from other groups ↩