TreeAlign

TreeAlign is a model for scDNA & scRNA integration and subclonal CNA dosage effects.

Installation and dependencies

1. TreeAlign has been implemented in Python3 and can be installed into a virtual environment using the following commands

    $> git clone https://github.com/AlexHelloWorld/TreeAlign.git
    $> cd TreeAlign
    $> python3 -m venv venv/
    $> source venv/bin/activate
    $> pip install -r requirements.txt
    $> pip install .
   

2. TreeAlign depends on a number of python3 packages available on pypi and these dependencies are listed in setup.py and requirements.txt All the dependencies will be automatically installed using the above commands

Usage

Tutorials on basic TreeAlign usage can be found here.