add env to workflow #17
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| env: | |
| COVERAGE_PYTHON_VERSION: "3.8" # make coverage badge only for this version | |
| jobs: | |
| test: | |
| name: Test RustBam on Ubuntu with Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential python3-dev python3-pip cargo | |
| - name: Setup Virtual Environment | |
| run: | | |
| python -m venv venv | |
| source venv/bin/activate | |
| pip install maturin pytest coverage | |
| - name: Build and Install RustBam | |
| run: | | |
| source venv/bin/activate | |
| maturin develop | |
| - name: Verify RustBam CLI | |
| run: | | |
| source venv/bin/activate | |
| rustbam --help | |
| - name: Run Tests with Coverage | |
| run: | | |
| source venv/bin/activate | |
| coverage run -m pytest -v | |
| coverage report -m | |
| - name: Coverage Badge | |
| uses: tj-actions/coverage-badge-py@v2 | |
| if: matrix.python-version == env.COVERAGE_PYTHON_VERSION | |
| - name: Verify Changed files | |
| uses: tj-actions/verify-changed-files@v17 | |
| id: verify-changed-files | |
| if: matrix.python-version == env.COVERAGE_PYTHON_VERSION | |
| with: | |
| files: coverage.svg | |
| - name: Commit files | |
| if: steps.verify-changed-files.outputs.files_changed == 'true' && matrix.python-version == env.COVERAGE_PYTHON_VERSION | |
| run: | | |
| git config --local user.email "github-actions[bot]@users.noreply.github.com" | |
| git config --local user.name "github-actions[bot]" | |
| git add coverage.svg | |
| git commit -m "update coverage.svg" | |
| - name: Push changes | |
| if: steps.verify-changed-files.outputs.files_changed == 'true' && matrix.python-version == env.COVERAGE_PYTHON_VERSION | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.github_token }} | |
| branch: ${{ github.ref }} |