Bump version to 4.2

Updates #85
shawnlaffan · Mar 28, 2023 · ebef082 · ebef082
1 parent 6acfdee
commit ebef082
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Showing 101 changed files with 101 additions and 101 deletions.
diff --git a/bin/BiodiverseGUI.pl b/bin/BiodiverseGUI.pl
@@ -44,7 +44,7 @@ BEGIN
 #no warnings 'redefine';
 no warnings 'once';
 use English qw { -no_match_vars };
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 local $OUTPUT_AUTOFLUSH = 1;
 

diff --git a/bin/load_and_randomise.pl b/bin/load_and_randomise.pl
@@ -14,7 +14,7 @@
 
 local $| = 1;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::Config;
 

diff --git a/bin/load_and_randomise_wrapper.pl b/bin/load_and_randomise_wrapper.pl
@@ -15,7 +15,7 @@
 #use lib Path::Class::dir ( $Bin, '..', 'lib')->stringify;
 use rlib;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 #  are we running as a PerlApp executable?
 my $perl_app_tool = $PerlApp::TOOL;

diff --git a/bin/run_randomisation.pl b/bin/run_randomisation.pl
@@ -15,7 +15,7 @@
 
 local $| = 1;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::Config;
 use Biodiverse::BaseData;

diff --git a/etc/versions.txt b/etc/versions.txt
@@ -2,7 +2,7 @@
 Version numbers for Biodiverse releases. 
 
 [release]
-4.1
+4.2
 
 [development]
 3.99_005
diff --git a/lib/App/Biodiverse.pm b/lib/App/Biodiverse.pm
@@ -3,7 +3,7 @@ package App::Biodiverse;
 use strict;
 use warnings;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 1;
 

diff --git a/lib/Biodiverse/BaseData.pm b/lib/Biodiverse/BaseData.pm
@@ -49,7 +49,7 @@ use Biodiverse::Indices;
 use Biodiverse::Metadata::Parameter;
 my $parameter_metadata_class = 'Biodiverse::Metadata::Parameter';
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use parent qw {
     Biodiverse::Common

diff --git a/lib/Biodiverse/BaseData/Exclusions.pm b/lib/Biodiverse/BaseData/Exclusions.pm
@@ -4,7 +4,7 @@ use strict;
 use warnings;
 use 5.022;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Carp;
 use Scalar::Util qw /looks_like_number blessed reftype/;

diff --git a/lib/Biodiverse/BaseData/Import.pm b/lib/Biodiverse/BaseData/Import.pm
@@ -4,7 +4,7 @@ use warnings;
 use 5.022;
 use English qw { -no_match_vars };
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::Metadata::Parameter;
 my $parameter_metadata_class = 'Biodiverse::Metadata::Parameter';

diff --git a/lib/Biodiverse/BaseData/ManageOutputs.pm b/lib/Biodiverse/BaseData/ManageOutputs.pm
@@ -4,7 +4,7 @@ use strict;
 use warnings;
 use 5.022;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Carp;
 use Scalar::Util qw /looks_like_number blessed reftype/;

diff --git a/lib/Biodiverse/BaseStruct.pm b/lib/Biodiverse/BaseStruct.pm
@@ -27,7 +27,7 @@ use Sort::Key::Natural qw /natsort rnatsort/;
 use constant HAVE_DATA_RECURSIVE
   => !$ENV{BD_NO_USE_PANDA} && eval 'require Data::Recursive';
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 my $EMPTY_STRING = q{};
 

diff --git a/lib/Biodiverse/BaseStruct/Export.pm b/lib/Biodiverse/BaseStruct/Export.pm
@@ -4,7 +4,7 @@ use strict;
 use warnings;
 use 5.022;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Carp;
 use English ( -no_match_vars );

diff --git a/lib/Biodiverse/Cluster.pm b/lib/Biodiverse/Cluster.pm
@@ -3,7 +3,7 @@ package Biodiverse::Cluster;
 
 use 5.010;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Carp;
 use strict;

diff --git a/lib/Biodiverse/Common.pm b/lib/Biodiverse/Common.pm
@@ -50,7 +50,7 @@ use Biodiverse::Exception;
 
 require Clone;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 my $EMPTY_STRING = q{};
 

diff --git a/lib/Biodiverse/Config.pm b/lib/Biodiverse/Config.pm
@@ -16,7 +16,7 @@ use Ref::Util qw { :all };
 
 use English ( -no_match_vars );
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 #use Exporter;
 #use Devel::Symdump;

diff --git a/lib/Biodiverse/ElementProperties.pm b/lib/Biodiverse/ElementProperties.pm
@@ -7,7 +7,7 @@ use Scalar::Util qw/looks_like_number/;
 
 use Biodiverse::Exception;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use parent qw /Biodiverse::BaseStruct Biodiverse::Common/; #/
 use Ref::Util qw { :all };

diff --git a/lib/Biodiverse/Exception.pm b/lib/Biodiverse/Exception.pm
@@ -1,7 +1,7 @@
 package Biodiverse::Exception;
 use strict;
 use warnings;
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Config;
 my ($bit_size, $prng_init_descr, $other_bit_size);

diff --git a/lib/Biodiverse/GUI/BasedataImport.pm b/lib/Biodiverse/GUI/BasedataImport.pm
@@ -7,7 +7,7 @@ use English ( -no_match_vars );
 
 use Carp;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use File::Basename;
 use Gtk2;

diff --git a/lib/Biodiverse/GUI/Callbacks.pm b/lib/Biodiverse/GUI/Callbacks.pm
@@ -7,7 +7,7 @@ use English ( -no_match_vars );
 
 use Browser::Start qw( open_url );    #  needed for the about dialogue
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use constant FALSE => 0;
 use constant TRUE  => 1;

diff --git a/lib/Biodiverse/GUI/CellPopup.pm b/lib/Biodiverse/GUI/CellPopup.pm
@@ -11,7 +11,7 @@ use Sort::Key::Natural qw /natsort/;
 use Ref::Util qw /is_ref is_arrayref is_hashref/;
 use Biodiverse::Utilities qw/sort_list_with_tree_names_aa/;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Gtk2;
 

diff --git a/lib/Biodiverse/GUI/DeleteElementProperties.pm b/lib/Biodiverse/GUI/DeleteElementProperties.pm
@@ -5,7 +5,7 @@ use strict;
 use warnings;
 use Carp;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Gtk2;
 #use Biodiverse::RemapGuesser qw/guess_remap/;

diff --git a/lib/Biodiverse/GUI/Dendrogram.pm b/lib/Biodiverse/GUI/Dendrogram.pm
@@ -17,7 +17,7 @@ use Gtk2;
 use Gnome2::Canvas;
 use POSIX qw /ceil/; # for ceil()
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Biodiverse::TreeNode;

diff --git a/lib/Biodiverse/GUI/Exclusions.pm b/lib/Biodiverse/GUI/Exclusions.pm
@@ -8,7 +8,7 @@ use Carp;
 
 use Gtk2;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Biodiverse::GUI::ParametersTable;

diff --git a/lib/Biodiverse/GUI/Export.pm b/lib/Biodiverse/GUI/Export.pm
@@ -15,7 +15,7 @@ use Cwd;
 
 use List::MoreUtils qw /any none/;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Biodiverse::GUI::ParametersTable;

diff --git a/lib/Biodiverse/GUI/GUIManager.pm b/lib/Biodiverse/GUI/GUIManager.pm
@@ -6,7 +6,7 @@ use 5.010;
 
 #use Data::Structure::Util qw /has_circular_ref get_refs/; #  hunting for circular refs
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 #use Data::Dumper;
 use Carp;

diff --git a/lib/Biodiverse/GUI/Grid.pm b/lib/Biodiverse/GUI/Grid.pm
@@ -21,7 +21,7 @@ use Tree::R;
 
 use Geo::ShapeFile;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Biodiverse::GUI::CellPopup;

diff --git a/lib/Biodiverse/GUI/Help.pm b/lib/Biodiverse/GUI/Help.pm
@@ -17,7 +17,7 @@ require IO::Socket::SSL;
 
 use Biodiverse::GUI::YesNoCancel;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 ##############################################
 #  Web links.  

diff --git a/lib/Biodiverse/GUI/Legend.pm b/lib/Biodiverse/GUI/Legend.pm
@@ -21,7 +21,7 @@ use Tree::R;
 
 #use Geo::ShapeFile;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Biodiverse::GUI::CellPopup;

diff --git a/lib/Biodiverse/GUI/Manager/BaseDatas.pm b/lib/Biodiverse/GUI/Manager/BaseDatas.pm
@@ -4,7 +4,7 @@ use strict;
 use warnings;
 use 5.022;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Carp;
 use Scalar::Util qw /blessed/;

diff --git a/lib/Biodiverse/GUI/MatrixGrid.pm b/lib/Biodiverse/GUI/MatrixGrid.pm
@@ -16,7 +16,7 @@ use POSIX qw /floor/;
 use List::Util qw /min max/;
 use List::MoreUtils qw /minmax/;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Gtk2;
 use Gnome2::Canvas;

diff --git a/lib/Biodiverse/GUI/MatrixImport.pm b/lib/Biodiverse/GUI/MatrixImport.pm
@@ -8,7 +8,7 @@ use Ref::Util qw { :all };
 
 use Gtk2;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::Project;
 use Biodiverse::GUI::BasedataImport

diff --git a/lib/Biodiverse/GUI/OpenDialog.pm b/lib/Biodiverse/GUI/OpenDialog.pm
@@ -11,7 +11,7 @@ use Gtk2;
 
 use Cwd;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Ref::Util qw { :all };

diff --git a/lib/Biodiverse/GUI/Overlays.pm b/lib/Biodiverse/GUI/Overlays.pm
@@ -6,7 +6,7 @@ use Gtk2;
 #use Data::Dumper;
 use Geo::ShapeFile;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Biodiverse::GUI::Project;

diff --git a/lib/Biodiverse/GUI/ParametersTable.pm b/lib/Biodiverse/GUI/ParametersTable.pm
@@ -60,7 +60,7 @@ use Gtk2;
 use Carp;
 use English qw { -no_match_vars };
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::GUIManager;
 use Biodiverse::GUI::SpatialParams;

diff --git a/lib/Biodiverse/GUI/PhylogenyImport.pm b/lib/Biodiverse/GUI/PhylogenyImport.pm
@@ -13,7 +13,7 @@ use Biodiverse::GUI::BasedataImport;
 use Biodiverse::GUI::YesNoCancel;
 
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::GUI::Project;
 

diff --git a/lib/Biodiverse/GUI/Popup.pm b/lib/Biodiverse/GUI/Popup.pm
@@ -9,7 +9,7 @@ use Biodiverse::Utilities qw/sort_list_with_tree_names_aa/;
 
 use Gtk2;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use English qw { -no_match_vars };
 

diff --git a/lib/Biodiverse/GUI/PopupObject.pm b/lib/Biodiverse/GUI/PopupObject.pm
@@ -3,7 +3,7 @@ package Biodiverse::GUI::PopupObject;
 use strict;
 use warnings;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Gtk2;
 

diff --git a/lib/Biodiverse/GUI/ProgressDialog.pm b/lib/Biodiverse/GUI/ProgressDialog.pm
@@ -17,7 +17,7 @@ use Time::HiRes qw/time/;
 require Biodiverse::Config;
 my $progress_update_interval = $Biodiverse::Config::progress_update_interval;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 my $TRUE  = 'TRUE';
 my $FALSE = 'FALSE';

diff --git a/lib/Biodiverse/GUI/Project.pm b/lib/Biodiverse/GUI/Project.pm
@@ -15,7 +15,7 @@ use Ref::Util qw { :all };
 
 use English ( -no_match_vars );
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 require Exporter;
 use parent qw/Exporter Biodiverse::Common/;

diff --git a/lib/Biodiverse/GUI/RemapGUI.pm b/lib/Biodiverse/GUI/RemapGUI.pm
@@ -4,7 +4,7 @@ use 5.010;
 use strict;
 use warnings;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Gtk2;
 use Biodiverse::RemapGuesser qw/guess_remap/;

diff --git a/lib/Biodiverse/GUI/SpatialParams.pm b/lib/Biodiverse/GUI/SpatialParams.pm
@@ -21,7 +21,7 @@ use Carp;
 
 use English qw { -no_match_vars };
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Glib;
 use Gtk2;

diff --git a/lib/Biodiverse/GUI/Tabs/CalculationsTree.pm b/lib/Biodiverse/GUI/Tabs/CalculationsTree.pm
@@ -19,7 +19,7 @@ use Biodiverse::Indices;
 use Ref::Util qw { :all };
 use Text::Wrapper;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 #use Readonly;
 my $i;

diff --git a/lib/Biodiverse/GUI/Tabs/Clustering.pm b/lib/Biodiverse/GUI/Tabs/Clustering.pm
@@ -25,7 +25,7 @@ use Biodiverse::GUI::Tabs::CalculationsTree;
 use Biodiverse::Indices;
 use Biodiverse::Utilities qw/sort_list_with_tree_names_aa/;
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use Biodiverse::Cluster;
 use Biodiverse::RegionGrower;

diff --git a/lib/Biodiverse/GUI/Tabs/Labels.pm b/lib/Biodiverse/GUI/Tabs/Labels.pm
@@ -27,7 +27,7 @@ use Biodiverse::GUI::Overlays;
 use Biodiverse::Metadata::Parameter;
 my $parameter_metadata_class = 'Biodiverse::Metadata::Parameter';
 
-our $VERSION = '4.1';
+our $VERSION = '4.2';
 
 use parent qw {
     Biodiverse::GUI::Tabs::Tab