This github reporitory contains the code to visualize a list of genes on PPI.
Run the following command to use extract_network_for_geneList.py.
python extract_network_for_geneList.py example_genelist.txt
Run the following command to merge the networks.
python merge_gmls.py network1.gml network2.gml network3.gml ...
Run the following command to expand edges based on attribute values.
python expand_edges.py network.gml [attribute]