Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

adding ontoSummarize #40

Open
wants to merge 3 commits into
base: master
Choose a base branch
from
Open

adding ontoSummarize #40

wants to merge 3 commits into from

Conversation

krlong68
Copy link
Collaborator

No description provided.

@shbrief
Copy link
Owner

shbrief commented Nov 19, 2024

Can you make this work with labels (e.g., actual term name) as well?

@krlong68
Copy link
Collaborator Author

If you want to input term names/labels, the best practice would be to use the rols OlsSearch function first, then use ontoSummarize. This is just so that the user can make the decisions as to which ontology terms are meant by each name.

I updated ontoSummarize to automatically output results including both ontology IDs and labels. It is now formatted as a dataframe.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants