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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 985 184

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 78 36

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 63 26

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 54 16

  5. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 42 12

  6. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 38 15

Repositories

Showing 10 of 123 repositories
  • glittr Public

    A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

    sib-swiss/glittr’s past year of commit activity
    PHP 36 MIT 2 3 0 Updated Dec 11, 2024
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples’s past year of commit activity
    HTML 10 10 5 (1 issue needs help) 2 Updated Dec 10, 2024
  • sparql-llm Public

    🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm’s past year of commit activity
    Jupyter Notebook 10 MIT 1 1 0 Updated Dec 10, 2024
  • sparql-editor Public

    💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

    sib-swiss/sparql-editor’s past year of commit activity
    TypeScript 5 MIT 0 5 0 Updated Dec 10, 2024
  • cancer-variants-training Public
    sib-swiss/cancer-variants-training’s past year of commit activity
    Lua 1 CC-BY-4.0 2 0 0 Updated Dec 10, 2024
  • kgsteward Public

    Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)

    sib-swiss/kgsteward’s past year of commit activity
    Python 5 GPL-3.0 2 0 0 Updated Dec 9, 2024
  • statistics-and-machine-learning-training Public
    sib-swiss/statistics-and-machine-learning-training’s past year of commit activity
    Jupyter Notebook 22 CC-BY-4.0 10 0 1 Updated Dec 9, 2024
  • single-cell-python-training Public
    sib-swiss/single-cell-python-training’s past year of commit activity
    HTML 1 CC-BY-4.0 0 0 0 Updated Dec 8, 2024
  • spatial-transcriptomics-training Public
    sib-swiss/spatial-transcriptomics-training’s past year of commit activity
    R 2 CC-BY-4.0 1 1 0 Updated Dec 8, 2024
  • glittr-stats Public

    General statistics of Glittr.org. Comes with the manuscript.

    sib-swiss/glittr-stats’s past year of commit activity
    PostScript 1 0 0 0 Updated Dec 8, 2024
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