01-rat-proteins.ttl

@prefix ex: <https://sparql.omabrowser.org/.well-known/sparql-examples/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:1 a sh:SPARQLExecutable,
        sh:SPARQLSelectExecutable ;
    rdfs:comment "Find all Rattus norvegicus proteins present in OMA RDF database."@en ;
    sh:prefixes _:sparql_examples_prefixes ;
    sh:select """PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX orth: <http://purl.org/net/orth#>
PREFIX up: <http://purl.uniprot.org/core/>
PREFIX obo: <http://purl.obolibrary.org/obo/>

SELECT ?protein ?OMA_link
WHERE {
    ?protein a orth:Protein ;
        orth:organism ?organism .
    ?organism obo:RO_0002162 ?taxon . # in taxon
    ?taxon up:scientificName 'Rattus norvegicus' .
    ?protein rdfs:seeAlso ?OMA_link .
}""" ;
    schema:target <https://sparql.omabrowser.org/sparql> .