Squashed commit of the following:

commit f352762
Author: Joe Heffernan <[email protected]>
Date:   Wed Feb 14 17:42:55 2024 -0800

    Fix/bump react (#461)

    * bump react, react-waypoint, react dom, @types/react

    * declare children in sider and upload props for react 18 compatibility

    * bump @types/react-dom

    * use createRoot API to render App

    * commit lock file

    * bump to viewer 3.7.0 with react 18

    * use non-null assertion on container in createRoot call

commit 39a6f7b
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jan 29 19:28:31 2024 -0800

    Bump follow-redirects from 1.15.2 to 1.15.4 (#460)

    Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.15.2 to 1.15.4.
    - [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
    - [Commits](follow-redirects/follow-redirects@v1.15.2...v1.15.4)

    ---
    updated-dependencies:
    - dependency-name: follow-redirects
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 6b26307
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jan 29 19:28:19 2024 -0800

    Bump plotly.js from 2.20.0 to 2.25.2 (#457)

    Bumps [plotly.js](https://github.com/plotly/plotly.js) from 2.20.0 to 2.25.2.
    - [Release notes](https://github.com/plotly/plotly.js/releases)
    - [Changelog](https://github.com/plotly/plotly.js/blob/master/CHANGELOG.md)
    - [Commits](plotly/plotly.js@v2.20.0...v2.25.2)

    ---
    updated-dependencies:
    - dependency-name: plotly.js
      dependency-type: direct:production
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 38dda7c
Author: Joe Heffernan <[email protected]>
Date:   Thu Jan 4 10:27:17 2024 -0800

    open aics homepage in new tab (#454)

commit 106935b
Author: Joe Heffernan <[email protected]>
Date:   Tue Dec 19 11:51:35 2023 -0800

    Feature/color picker (#432)

    * initial components and styling

    * shrink checkbox to expose swatch

    * shrink chexbox to make swatch clickable

    * pass data into color swatch

    * remove unused styling

    * handleColorChange in picker

    * pass props and helders to color picker modal

    * add colorPicker to color swatch

    * types actions constants selectors for colorChanges

    * selector in viewer panel

    * preserve initial color in swatch

    * style parent swatch when children dont match

    * recent colors into redux

    * change modal to popover

    * update import

    * clean up stylesheets

    * tidy css and imports

    * bump viewer version

    * remove extra ?

    * update viewer

    * viewerpanel selector test update

    * update dependecies

    * add tests for getColorChanges

    * fix type imports in selectors

    * web app version

    * remove comment

    * consolidate colorpicker and popover

    * organize props and style rules

    * pointer on color swatch

    * formatting

    * color picker tooltip color to constant

    * swap replace for slice

    * debounce color selection

    * implement orthographic camera

    * initial styling of camera controls

    * ortho/perspective icons

    * define viewer button color variables

    * focus:hover state on home button

    * playback control styling

    * fix button exceeding border

    * orth/persp icons swapped

    * remove redundant ternary

    * rename set camera

    * audit fix (#437)

    * change check for if a file is shareable (#439)

    * change check for if a file is shareable

    * use constant for trajFileName

    * use selector instead of type guard

    * add unit test

    * remove accidental auto import

    * Update ux_issue.md (#433)

    * menu item and modal

    * removing logs

    * remove unneeded jsx fragment wrappers

    * remove commented code

    * styling update

    * remove comments

    * typo

    * prevent bg color change after click

    * Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

    * fix menus offsets (#440)

    * fix menus offsets

    * move version info

    * update viewer to 3.6.3

    * update viewer and fix types (#445)

    * 0.10.0

    * remove redunant line

    * implement orthographic camera

    * initial styling of camera controls

    * define viewer button color variables

    * focus:hover state on home button

    * playback control styling

    * orth/persp icons swapped

    * remove redundant ternary

    * install new viewer version

    * rename set camera

    * menu item and modal

    * removing logs

    * remove unneeded jsx fragment wrappers

    * remove commented code

    * styling update

    * remove comments

    * typo

    * Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

    * fix menus offsets (#440)

    * fix menus offsets

    * move version info

    * update viewer to 3.6.3

    * update viewer and fix types (#445)

    * pass down actions from model panel to picker

    * add hover state rules

    * pass in debouncedColor

    * [to undo] - local install

    * remove colorChangesMap

    * prevent color assignment on first opening picker

    * fix typing and save all color changes

    * make color change an object

    * install

    * store colors for correct rendering

    * add a done call

    * change interface

    * install viewer

    * update viewer

    * remove old style sheet

    * clean up styles and change order on parents

    * style children selection row

    * style labels

    * style sub menu better

    * clean up styles

    * revert change

    * make sure colors are consistently cased

    * fix imports

    * wip - not have popover move up

    * remove color swatch component and get color picker aligned with swatch

    * flx classnames

    * fix typo

    * fix checkall button

    * fix classname

    * make render functions for colorpicker

    * keep swatch constant until color is set, change label to "previous"

    * adjusting labels

    * Update src/components/CheckBoxTree/style.css

    Co-authored-by: Peyton Lee <[email protected]>

    * rename colors

    * sync children remove log

    * Fix/viewer imports (#453)

    * fix imports to be from the top level

    * update viewer

    * Update src/components/SharedCheckbox/style.css

    Co-authored-by: Cameron Fraser <[email protected]>

    * remove return

    * clean up styling

    * change names of checkboxtree components

    ---------

    Co-authored-by: Megan Riel-Mehan <[email protected]>
    Co-authored-by: Lyndsay <[email protected]>
    Co-authored-by: Blair Lyons <[email protected]>
    Co-authored-by: Peyton Lee <[email protected]>
    Co-authored-by: Cameron Fraser <[email protected]>

commit 7bfdc1f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Fri Dec 8 14:21:10 2023 -0800

    Bump @adobe/css-tools from 4.3.1 to 4.3.2 (#449)

    Bumps [@adobe/css-tools](https://github.com/adobe/css-tools) from 4.3.1 to 4.3.2.
    - [Changelog](https://github.com/adobe/css-tools/blob/main/History.md)
    - [Commits](https://github.com/adobe/css-tools/commits)

    ---
    updated-dependencies:
    - dependency-name: "@adobe/css-tools"
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 37a5fee
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 14:18:05 2023 -0800

    Update test-coverage.yml

commit f926754
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 14:15:46 2023 -0800

    Update test-coverage.yml

commit 16de0a0
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Fri Dec 8 14:03:32 2023 -0800

    Bump axios from 0.21.4 to 1.6.0 (#447)

    Bumps [axios](https://github.com/axios/axios) from 0.21.4 to 1.6.0.
    - [Release notes](https://github.com/axios/axios/releases)
    - [Changelog](https://github.com/axios/axios/blob/v1.x/CHANGELOG.md)
    - [Commits](axios/axios@v0.21.4...v1.6.0)

    ---
    updated-dependencies:
    - dependency-name: axios
      dependency-type: direct:production
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    Co-authored-by: meganrm <[email protected]>

commit 8fad286
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 13:53:25 2023 -0800

    check if it's a dependabot PR (#450)

commit 4d149c8
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Dec 4 13:35:30 2023 -0800

    Bump @babel/traverse from 7.20.5 to 7.23.2 (#442)

    Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.20.5 to 7.23.2.
    - [Release notes](https://github.com/babel/babel/releases)
    - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
    - [Commits](https://github.com/babel/babel/commits/v7.23.2/packages/babel-traverse)

    ---
    updated-dependencies:
    - dependency-name: "@babel/traverse"
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit b432dff
Author: Joe Heffernan <[email protected]>
Date:   Wed Nov 29 13:34:18 2023 -0800

    Fix/share download styling (#448)

    * add color

    * remove pipe and fix button order

    * fix download button styling

    * fix share button styling

    * remove whitespace

    * change hover state selector to sync with tooltip

    * turn functions to boolean constants

    * streamline tooltip constants

    * move btn styles to appheader

commit c6eaea3
Author: Blair Lyons <[email protected]>
Date:   Mon Oct 23 11:06:47 2023 -0700

    0.10.0

commit f13dcb0
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Oct 20 12:46:48 2023 -0700

    update viewer and fix types (#445)

commit 4baff29
Author: Blair Lyons <[email protected]>
Date:   Thu Oct 19 14:49:46 2023 -0700

    update viewer to 3.6.3

commit ca5ac24
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Oct 16 10:41:45 2023 -0700

    fix menus offsets (#440)

    * fix menus offsets

    * move version info

commit 244e726
Merge: 60326cf 836510a
Author: Joe Heffernan <[email protected]>
Date:   Wed Oct 11 13:32:07 2023 -0700

    Merge pull request #423 from simularium/feature/version-info

    Feature/version info

commit 836510a
Author: Joe Heffernan <[email protected]>
Date:   Wed Oct 11 11:47:54 2023 -0700

    Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

commit caac57b
Author: Joe Heffernan <[email protected]>
Date:   Tue Oct 10 12:51:42 2023 -0700

    prevent bg color change after click

commit 23be0d4
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 15:27:12 2023 -0700

    typo

commit 141b037
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:34:44 2023 -0700

    remove comments

commit 8dcccc1
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:34:28 2023 -0700

    styling update

commit 4c215c7
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:14:01 2023 -0700

    remove commented code

commit 72c2e8d
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:10:35 2023 -0700

    remove unneeded jsx fragment wrappers

commit dcff5c8
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:27:55 2023 -0700

    removing logs

commit 3e9d578
Author: Joe Heffernan <[email protected]>
Date:   Tue May 23 10:56:42 2023 -0700

    menu item and modal

commit 60326cf
Author: Lyndsay <[email protected]>
Date:   Mon Oct 9 12:57:20 2023 -0700

    Update ux_issue.md (#433)

commit 72f1a23
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Oct 9 12:57:08 2023 -0700

    change check for if a file is shareable (#439)

    * change check for if a file is shareable

    * use constant for trajFileName

    * use selector instead of type guard

    * add unit test

    * remove accidental auto import

commit 67f2f58
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu Oct 5 13:28:50 2023 -0700

    audit fix (#437)

commit af14d01
Merge: 1314eed a78dee4
Author: Joe Heffernan <[email protected]>
Date:   Fri Sep 8 14:50:10 2023 -0700

    Merge pull request #430 from simularium/feature/orthographic-ui

    Feature/orthographic UI

commit a78dee4
Author: Joe Heffernan <[email protected]>
Date:   Fri Sep 8 09:21:09 2023 -0700

    rename set camera

commit 49598cc
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 28 19:00:29 2023 -0700

    install new viewer version

commit d5b8440
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 17 16:16:45 2023 -0700

    remove redundant ternary

commit aa0fc41
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 17 16:15:09 2023 -0700

    orth/persp icons swapped

commit 1b92d70
Author: Joe Heffernan <[email protected]>
Date:   Wed Aug 16 13:50:33 2023 -0700

    fix button exceeding border

commit 4969ca9
Merge: 29137a3 1314eed
Author: Joe Heffernan <[email protected]>
Date:   Wed Aug 16 13:28:05 2023 -0700

    Merge branch 'main' into feature/orthographic-ui
    merging main

commit 29137a3
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 14 13:01:55 2023 -0700

    playback control styling

commit 8756d05
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 14 13:00:59 2023 -0700

    focus:hover state on home button

commit 4506ce9
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:26:56 2023 -0700

    define viewer button color variables

commit f3cc830
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:25:50 2023 -0700

    ortho/perspective icons

commit b23d847
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:25:26 2023 -0700

    initial styling of camera controls

commit fab1840
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:23:15 2023 -0700

    implement orthographic camera

commit 1314eed
Merge: 2c949aa b9c37b2
Author: Joe Heffernan <[email protected]>
Date:   Thu Jul 20 16:37:06 2023 -0700

    Merge pull request #424 from simularium/feature/share-time-url

    Feature/share time url

commit b9c37b2
Author: Joe Heffernan <[email protected]>
Date:   Thu Jul 20 13:19:13 2023 -0700

    tooltip handler edit, fix alignment on time input

commit 2c949aa
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Jul 17 14:56:28 2023 -0700

    Update CODEOWNERS

commit 81bce36
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Jul 11 16:17:20 2023 -0700

    change gh-deploy to be a dev build (#426)

commit 01468c3
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Jul 11 16:17:03 2023 -0700

    Update CONTRIBUTING.md (#425)

commit 5ad5660
Merge: 0b79159 5dda5da
Author: meganrm <[email protected]>
Date:   Tue Jun 27 17:41:25 2023 -0700

    Merge branch 'feature/share-time-url' of https://github.com/simularium/simularium-website into feature/share-time-url

commit 0b79159
Author: meganrm <[email protected]>
Date:   Tue Jun 27 17:41:18 2023 -0700

    reduce annotations

commit 5dda5da
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 15:13:51 2023 -0700

    update return type receiveTimeChange

commit 5113dfe
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 13:57:59 2023 -0700

    update test

commit 1e226e8
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 13:48:29 2023 -0700

    test for editUrlParams and clean up

commit b93f789
Author: meganrm <[email protected]>
Date:   Tue Jun 27 12:19:00 2023 -0700

    changed names of functions

commit 6dfe513
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:58:00 2023 -0700

    gh actions from ubuntu to macos

commit 1d1b73a
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:57:14 2023 -0700

    add jest coverage reporters

commit 9a62549
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:50:41 2023 -0700

    update jest

commit d58b4c6
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:48:56 2023 -0700

    update jest coverage

commit 0da60eb
Author: Joe Heffernan <[email protected]>
Date:   Mon Jun 26 12:15:10 2023 -0700

    ternary -> object, styling names, add href

commit b0f81ce
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 23 15:17:45 2023 -0700

    initial unit test

commit ecb0b9a
Merge: fb2a54f 918556c
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:48:15 2023 -0700

    Merge branch 'main' into feature/share-time-url

commit fb2a54f
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:11:04 2023 -0700

    space share and download buttons

commit 0245f77
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:07:33 2023 -0700

    move tooltip

commit f929046
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 04deea2
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit ee811e7
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 9e17781
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit 2166dc1
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 820afca
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit ce60a9d
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 41ea887
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit 305955e
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 20 15:48:53 2023 -0700

    move tooltip and unessary async

commit 6b21353
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:06:24 2023 -0700

    remove comment

commit f794da1
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:41:10 2023 -0700

    removing isDownloading

commit 70db90b
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:29:04 2023 -0700

    removing styling typo

commit 5b516c0
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:29:15 2023 -0700

    clean up comment

commit 8c2ac5e
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 10:36:47 2023 -0700

    use viewer getasblob method, bump viewer

commit a1dfdb1
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu May 18 22:23:10 2023 +0000

    use href for direct download if remote file

commit b2e1bad
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:56:07 2023 -0700

    removing comments

commit 8ff2ad8
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:51:47 2023 -0700

    disable button during downloading

commit 4448920
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:04:22 2023 -0700

    cleaning

commit 2a7b3d1
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:03:06 2023 -0700

    cleanup

commit 00fcfb4
Author: Joe Heffernan <[email protected]>
Date:   Thu May 4 11:53:55 2023 -0700

    styling, adding pipe divider

commit dbd6322
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 14:04:03 2023 -0700

    added download functionality

commit 13d0057
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 09:15:09 2023 -0700

    intial ui components

commit 918556c
Merge: 0749f1a f995097
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 09:12:17 2023 -0700

    Merge pull request #422 from simularium/feature/download-trajectory

    Feature/download trajectory

commit f995097
Merge: 39a70ca 0749f1a
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 09:09:55 2023 -0700

    Merge branch 'main' into feature/download-trajectory

commit 39a70ca
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 8319dc7
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit 054e670
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit cec3e9b
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit bb10334
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 20 15:48:53 2023 -0700

    move tooltip and unessary async

commit 7993889
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 15:24:34 2023 -0700

    remove redundant action from reducer

commit 67a2a63
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 15:22:33 2023 -0700

    remove blue text class

commit 225ebfd
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 14:52:42 2023 -0700

    shift style rules, add light theme, remove buffer

commit 0749f1a
Merge: cc135e8 ac22916
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 15:58:13 2023 -0700

    Merge pull request #417 from simularium/feature/updated-looping-playback

    looping playback and tooltip styling

commit 96eca5c
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 10:30:15 2023 -0700

    clean up

commit f2ba682
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 10:09:16 2023 -0700

    consolidate redundant functions

commit 57c1e4e
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 09:56:47 2023 -0700

    move clear and rest params to utils

commit b5a9bbe
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 17:37:34 2023 -0700

    clear old params before setting url

commit 8f668d6
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 13:54:24 2023 -0700

    cleaning

commit 7a954ca
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 13:52:52 2023 -0700

    mapping prop to dispatch

commit 8b8aa1b
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 10:22:02 2023 -0700

    update viewer

commit c8bb399
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:06:24 2023 -0700

    remove comment

commit 164a6c0
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:02:57 2023 -0700

    remove unused imports

commit 3a89200
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:00:09 2023 -0700

    hover styling

commit 63013b0
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:17:22 2023 -0700

    nested ternary -> if/else

commit ac22916
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 903c09e
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 6 16:25:41 2023 -0700

    add util func, move logic trigger to viewer panel

    Co-authored-by: Megan Riel-Mehan <[email protected]>

commit c1d6364
Author: Joe Heffernan <[email protected]>
Date:   Mon Jun 5 09:09:44 2023 -0700

    update viewer version

commit 48537b5
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:41:10 2023 -0700

    removing isDownloading

commit e14f332
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:29:04 2023 -0700

    removing styling typo

commit c87f78b
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:29:15 2023 -0700

    clean up comment

commit d2f5691
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 10:36:47 2023 -0700

    use viewer getasblob method, bump viewer

commit 73bba1a
Author: Joe Heffernan <[email protected]>
Date:   Wed May 31 10:58:46 2023 -0700

    update viewer

commit e5a1a70
Author: Joe Heffernan <[email protected]>
Date:   Tue May 23 15:09:04 2023 -0700

    refactor to use displayTimes

commit 4391367
Author: Joe Heffernan <[email protected]>
Date:   Mon May 22 13:06:31 2023 -0700

    truncating decimals in url

commit c06702d
Author: Joe Heffernan <[email protected]>
Date:   Fri May 19 14:53:02 2023 -0700

    rename components and clean up functions

commit 6a5ed73
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu May 18 22:23:10 2023 +0000

    use href for direct download if remote file

commit 9e50b00
Author: Joe Heffernan <[email protected]>
Date:   Thu May 18 13:18:43 2023 -0700

    ui components for share time in url

commit 12836f5
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:56:07 2023 -0700

    removing comments

commit d6ebc41
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit 84b3681
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:51:47 2023 -0700

    disable button during downloading

commit 6a14428
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:04:22 2023 -0700

    cleaning

commit 2faf8d2
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:03:06 2023 -0700

    cleanup

commit e318c4d
Author: Joe Heffernan <[email protected]>
Date:   Thu May 4 11:53:55 2023 -0700

    styling, adding pipe divider

commit 3538d1f
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 14:04:03 2023 -0700

    added download functionality

commit 57b5c1f
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 09:15:09 2023 -0700

    intial ui components

commit f320abe
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 0221067
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit cc135e8
Author: ascibisz <[email protected]>
Date:   Fri Apr 21 13:53:12 2023 -0700

    update version for add-to-project action

commit ec1b5f0
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Apr 18 12:13:10 2023 -0700

    Update CODEOWNERS

commit dbe5b58
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Apr 10 11:07:06 2023 -0700

    Bump json5 from 1.0.1 to 1.0.2 (#404)

    Bumps [json5](https://github.com/json5/json5) from 1.0.1 to 1.0.2.
    - [Release notes](https://github.com/json5/json5/releases)
    - [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
    - [Commits](json5/json5@v1.0.1...v1.0.2)

    ---
    updated-dependencies:
    - dependency-name: json5
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

package.json

@@ -35,8 +35,8 @@
         "@types/jest": "^26.0.24",
         "@types/jsdom": "12.2.2",
         "@types/lodash": "4.14.121",
-        "@types/react": "^16.9.49",
-        "@types/react-dom": "^16.9.8",
+        "@types/react": "^18.2.39",
+        "@types/react-dom": "^18.2.17",
         "@types/react-plotly.js": "^2.2.4",
         "@types/react-router-dom": "^5.1.5",
         "@types/sinon": "7.0.6",
@@ -93,7 +93,7 @@
         "webpack-dev-server": "^4.10.1"
     },
     "dependencies": {
-        "@aics/simularium-viewer": "^3.6.4",
+        "@aics/simularium-viewer": "^3.7.0",
         "@ant-design/css-animation": "^1.7.3",
         "@ant-design/icons": "^4.0.6",
         "antd": "^4.23.6",
@@ -103,18 +103,18 @@
         "core-js": "2.5.5",
         "lodash": "^4.17.20",
         "moment": "^2.29.4",
-        "plotly.js": "^2.20.0",
+        "plotly.js": "^2.25.2",
         "query-string": "^6.13.1",
         "raf": "^3.4.1",
-        "react": "^16.9.0",
+        "react": "^18.2.0",
         "react-colorful": "^5.6.1",
-        "react-dom": "^16.9.0",
+        "react-dom": "^18.2.0",
         "react-hotkeys-hook": "^3.3.2",
         "react-markdown": "^7.0.1",
         "react-plotly.js": "^2.5.0",
         "react-redux": "^8.0.4",
         "react-router-dom": "^5.2.0",
-        "react-waypoint": "^9.0.3",
+        "react-waypoint": "^10.3.0",
         "redux": "4.2.0",
         "redux-logic": "^3.0.3",
         "reselect": "4.0.0",

src/components/Icons/index.tsx

@@ -47,6 +47,8 @@ export const AicsLogo = <img src={AicsLogoWhite} style={{ width: "140px" }} />;
 export const StepForward = <img src={ClockwiseArrow} />;
 export const StepBack = <img src={CounterClockwiseArrow} />;
 export const BetaTag = <img src={Beta} style={{ width: "42px" }} />;
+export const OrthographicCamera = <img src={Orthographic} />;
+export const PerspectiveCamera = <img src={Perspective} />;
 export const UpRightArrow = <ArrowLeftOutlined rotate={135} />;
 
 export default {

src/components/LocalFileUpload/index.tsx

@@ -18,6 +18,7 @@ interface FileUploadProps {
     maxCount?: number;
     multiple?: boolean;
     name?: string;
+    children?: React.ReactNode;
 }
 
 /**

src/components/SideBar/index.tsx

@@ -12,6 +12,7 @@ import styles from "./style.css";
 interface SiderProps {
     type: string;
     onCollapse: (open: boolean) => void;
+    children?: React.ReactNode;
 }
 
 interface SiderState {

src/index.tsx

@@ -3,7 +3,7 @@ import "core-js/es6/promise";
 import "core-js/es6/set";
 
 import React from "react";
-import { render } from "react-dom";
+import { createRoot } from "react-dom/client";
 import { Provider, useDispatch, batch } from "react-redux";
 import { Layout } from "antd";
 import { BrowserRouter, Switch, Route, useLocation } from "react-router-dom";
@@ -105,6 +105,7 @@ console.log("Welcome to Simularium " + SIMULARIUM_BUILD_ENVIRONMENT + " build");
 console.log("Simularium Website Version " + SIMULARIUM_WEBSITE_VERSION);
 console.log("Simularium Viewer Version " + SIMULARIUM_VIEWER_VERSION);
 
-const renderApp = () => render(<App />, document.getElementById(APP_ID));
-
-renderApp();
+const container: HTMLElement | null = document.getElementById(APP_ID);
+// eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+const root = createRoot(container!);
+root.render(<App />);