autoconversion: Fix/conversion filename bug (#486) · simularium/simularium-website@7182f54

Commit

autoconversion: Fix/conversion filename bug (#486)

* update "no trajectory loaded" text for autoconversion

* [wip] - add import to dropdown

* Created action type for converting file

* initial work on conversion form overlay

* css work setting up conversion overlay

* cleaning up code for draft PR

* Update src/components/LoadFileMenu/index.tsx

Co-authored-by: Megan Riel-Mehan <[email protected]>

* #395 initial three tasks complete

* conversion overlay conditioanlly renders

* merging changes

* removing unused done keyword

* removing unused variable declaration

* [wip] - add import to dropdown

* Created action type for converting file

* removing unused done keyword

* removing unused variable declaration

* [wip] - add import to dropdown

* removing unused variable declaration

* fix problem caused by rebase

* Merge branch 'feature/add-import-drop-down' of https://github.com/simularium/simularium-website into feature/add-conversion-form-overlay

* cleaning for draft pr and new computer

* button disabled with route method

* minor fix

* minor fixes

* worked on wro
ng branch

* grabbing templates for conversion

Co-authored-by: Megan Riel-Mehan <[email protected]>

* redux dep strings to constnats, error fix

* create success action after downloading templates

* move conversion types to own file, add types

* save file to convert in state

* delete logs and change some names in PR review

* removing comments

* pr review: bug fixes, renaming, removing logs

* initial UI work on processing overlay

* fix menu spacing

* styles and functions

* clean styling

* color tweaks

* add cancel modal

* prevent multiple upload files

* rename and streamline passing of functions

* Bump json5 from 1.0.1 to 1.0.2 (#404)

Bumps [json5](https://github.com/json5/json5) from 1.0.1 to 1.0.2.
- [Release notes](https://github.com/json5/json5/releases)
- [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
- [Commits](https://github.com/json5/json5/compare/v1.0.1...v1.0.2)

---
updated-dependencies:
- dependency-name: json5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update CODEOWNERS

* update version for add-to-project action

* looping playback and tooltip styling

* removing unused imports

* remove redundant actions

* remove unused values, clean up

* intial ui components

* added download functionality

* styling, adding pipe divider

* cleanup

* cleaning

* disable button during downloading

* removing comments

* use href for direct download if remote file

* use viewer getasblob method, bump viewer

* clean up comment

* removing styling typo

* removing isDownloading

* update viewer version

* remove comment

* move tooltip and unessary async

* looping playback and tooltip styling

* removing unused imports

* remove redundant actions

* remove unused values, clean up

* duplicate from merge

* intial ui components

* added download functionality

* styling, adding pipe divider

* cleanup

* cleaning

* disable button during downloading

* removing comments

* use href for direct download if remote file

* use viewer getasblob method, bump viewer

* clean up comment

* removing styling typo

* removing isDownloading

* update viewer version

* remove comment

* move tooltip and unessary async

* looping playback and tooltip styling

* removing unused imports

* remove redundant actions

* remove unused values, clean up

* looping playback and tooltip styling

* removing unused imports

* remove redundant actions

* remove unused values, clean up

* add back uprightarrow icon

* rem redundant prop names

* update lockfile

* change html tags and remove code/stylerules

* Fix/css cleanup (#428)

* consolidate css

* format doc

* Feature/file type error (#434)

* initial components

* update styling

* initial validate file function

* clean up comments

* bump viewer version

* remove comments

* reducer code for SET_CONVERSION_ENGINE

* ExtensionMap type and handler for extension check

* make warning dynamic on engine selection

* move extensionmap to conversion-data-types

* convert ternaries to short circuit

* changes to avoid typescript errors

* add comment

* convert extensionmap  from interface to type

* todo: file extensions for differenet engines

* remove ternary

Co-authored-by: Peyton Lee <[email protected]>

* back ticks to quotes

---------

Co-authored-by: meganrm <[email protected]>
Co-authored-by: Peyton Lee <[email protected]>

* Feature/conversion check server (#452)

* update viewer and instlal uuid

* add colors for text and button hover states

* update viewer panel selectors for colorchange

* remove unused import from file error modal

* server error modal and styling

* config controller and check server in redux

* add server health check to user flow

* organize imports and comments

* remove redundant variable readyToConvert

* removes unused css and fixes html tags

* alphabetize css rules

* clarifies comments on logic

* renames red text css property

* fixes typos in comments

* receive file action to trigger health check logic

* remove outdated comment

* configure previous instance if controller exists

* use warning text color variable

Co-authored-by: Megan Riel-Mehan <[email protected]>

* change red text class name to warning text

* update warning text classnames

* spacing below imports

Co-authored-by: Peyton Lee <[email protected]>

* rename convert file to initalize conversion

* replace VIEWER_IMPORTING with conversionStatus

* consolidate status type declarations

* clean up white space and add todo comment

* restore default net config after server check

* remove white space from prettier formatting

* shorten PR comment to appropriate length for code

* shut down server checks if not on conversion page

* remove more whitespace

---------

Co-authored-by: Megan Riel-Mehan <[email protected]>
Co-authored-by: Peyton Lee <[email protected]>

* Squashed commit of the following:

commit 38dda7c1349d8e044c70c839d6c8bb18eedbf34f
Author: Joe Heffernan <[email protected]>
Date:   Thu Jan 4 10:27:17 2024 -0800

    open aics homepage in new tab (#454)

commit 106935b771feebabf47c0b3912a58c7068e49ab0
Author: Joe Heffernan <[email protected]>
Date:   Tue Dec 19 11:51:35 2023 -0800

    Feature/color picker (#432)

    * initial components and styling

    * shrink checkbox to expose swatch

    * shrink chexbox to make swatch clickable

    * pass data into color swatch

    * remove unused styling

    * handleColorChange in picker

    * pass props and helders to color picker modal

    * add colorPicker to color swatch

    * types actions constants selectors for colorChanges

    * selector in viewer panel

    * preserve initial color in swatch

    * style parent swatch when children dont match

    * recent colors into redux

    * change modal to popover

    * update import

    * clean up stylesheets

    * tidy css and imports

    * bump viewer version

    * remove extra ?

    * update viewer

    * viewerpanel selector test update

    * update dependecies

    * add tests for getColorChanges

    * fix type imports in selectors

    * web app version

    * remove comment

    * consolidate colorpicker and popover

    * organize props and style rules

    * pointer on color swatch

    * formatting

    * color picker tooltip color to constant

    * swap replace for slice

    * debounce color selection

    * implement orthographic camera

    * initial styling of camera controls

    * ortho/perspective icons

    * define viewer button color variables

    * focus:hover state on home button

    * playback control styling

    * fix button exceeding border

    * orth/persp icons swapped

    * remove redundant ternary

    * rename set camera

    * audit fix (#437)

    * change check for if a file is shareable (#439)

    * change check for if a file is shareable

    * use constant for trajFileName

    * use selector instead of type guard

    * add unit test

    * remove accidental auto import

    * Update ux_issue.md (#433)

    * menu item and modal

    * removing logs

    * remove unneeded jsx fragment wrappers

    * remove commented code

    * styling update

    * remove comments

    * typo

    * prevent bg color change after click

    * Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

    * fix menus offsets (#440)

    * fix menus offsets

    * move version info

    * update viewer to 3.6.3

    * update viewer and fix types (#445)

    * 0.10.0

    * remove redunant line

    * implement orthographic camera

    * initial styling of camera controls

    * define viewer button color variables

    * focus:hover state on home button

    * playback control styling

    * orth/persp icons swapped

    * remove redundant ternary

    * install new viewer version

    * rename set camera

    * menu item and modal

    * removing logs

    * remove unneeded jsx fragment wrappers

    * remove commented code

    * styling update

    * remove comments

    * typo

    * Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

    * fix menus offsets (#440)

    * fix menus offsets

    * move version info

    * update viewer to 3.6.3

    * update viewer and fix types (#445)

    * pass down actions from model panel to picker

    * add hover state rules

    * pass in debouncedColor

    * [to undo] - local install

    * remove colorChangesMap

    * prevent color assignment on first opening picker

    * fix typing and save all color changes

    * make color change an object

    * install

    * store colors for correct rendering

    * add a done call

    * change interface

    * install viewer

    * update viewer

    * remove old style sheet

    * clean up styles and change order on parents

    * style children selection row

    * style labels

    * style sub menu better

    * clean up styles

    * revert change

    * make sure colors are consistently cased

    * fix imports

    * wip - not have popover move up

    * remove color swatch component and get color picker aligned with swatch

    * flx classnames

    * fix typo

    * fix checkall button

    * fix classname

    * make render functions for colorpicker

    * keep swatch constant until color is set, change label to "previous"

    * adjusting labels

    * Update src/components/CheckBoxTree/style.css

    Co-authored-by: Peyton Lee <[email protected]>

    * rename colors

    * sync children remove log

    * Fix/viewer imports (#453)

    * fix imports to be from the top level

    * update viewer

    * Update src/components/SharedCheckbox/style.css

    Co-authored-by: Cameron Fraser <[email protected]>

    * remove return

    * clean up styling

    * change names of checkboxtree components

    ---------

    Co-authored-by: Megan Riel-Mehan <[email protected]>
    Co-authored-by: Lyndsay <[email protected]>
    Co-authored-by: Blair Lyons <[email protected]>
    Co-authored-by: Peyton Lee <[email protected]>
    Co-authored-by: Cameron Fraser <[email protected]>

commit 7bfdc1f9a394bd67ea56f8ff40ca63b2e290fab4
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Fri Dec 8 14:21:10 2023 -0800

    Bump @adobe/css-tools from 4.3.1 to 4.3.2 (#449)

    Bumps [@adobe/css-tools](https://github.com/adobe/css-tools) from 4.3.1 to 4.3.2.
    - [Changelog](https://github.com/adobe/css-tools/blob/main/History.md)
    - [Commits](https://github.com/adobe/css-tools/commits)

    ---
    updated-dependencies:
    - dependency-name: "@adobe/css-tools"
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 37a5fee141d3b523fb6de69642c2119a84615558
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 14:18:05 2023 -0800

    Update test-coverage.yml

commit f9267547f03c707b4cf3c91130658b78e35da67c
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 14:15:46 2023 -0800

    Update test-coverage.yml

commit 16de0a0461fb7e9107fa1e0ea3bda52472e83aaa
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Fri Dec 8 14:03:32 2023 -0800

    Bump axios from 0.21.4 to 1.6.0 (#447)

    Bumps [axios](https://github.com/axios/axios) from 0.21.4 to 1.6.0.
    - [Release notes](https://github.com/axios/axios/releases)
    - [Changelog](https://github.com/axios/axios/blob/v1.x/CHANGELOG.md)
    - [Commits](https://github.com/axios/axios/compare/v0.21.4...v1.6.0)

    ---
    updated-dependencies:
    - dependency-name: axios
      dependency-type: direct:production
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    Co-authored-by: meganrm <[email protected]>

commit 8fad286617be73b7b03ac9b108c8b2eef1bc203d
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 13:53:25 2023 -0800

    check if it's a dependabot PR (#450)

commit 4d149c8b99e72959d9ac2ff001efc5cf314d9661
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Dec 4 13:35:30 2023 -0800

    Bump @babel/traverse from 7.20.5 to 7.23.2 (#442)

    Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.20.5 to 7.23.2.
    - [Release notes](https://github.com/babel/babel/releases)
    - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
    - [Commits](https://github.com/babel/babel/commits/v7.23.2/packages/babel-traverse)

    ---
    updated-dependencies:
    - dependency-name: "@babel/traverse"
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit b432dff1b97833e5bfc94e9b5cac7dc0fbb19711
Author: Joe Heffernan <[email protected]>
Date:   Wed Nov 29 13:34:18 2023 -0800

    Fix/share download styling (#448)

    * add color

    * remove pipe and fix button order

    * fix download button styling

    * fix share button styling

    * remove whitespace

    * change hover state selector to sync with tooltip

    * turn functions to boolean constants

    * streamline tooltip constants

    * move btn styles to appheader

commit c6eaea3d3c81c88c240ee1e8c1e4825d8fe5545e
Author: Blair Lyons <[email protected]>
Date:   Mon Oct 23 11:06:47 2023 -0700

    0.10.0

commit f13dcb01b32c16f2d0f5853c7f890ab566a06244
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Oct 20 12:46:48 2023 -0700

    update viewer and fix types (#445)

commit 4baff29420c6a06647a08b5c57e64ad88ad09a86
Author: Blair Lyons <[email protected]>
Date:   Thu Oct 19 14:49:46 2023 -0700

    update viewer to 3.6.3

commit ca5ac248433cc26a66fa09a546332cae8d80c2b5
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Oct 16 10:41:45 2023 -0700

    fix menus offsets (#440)

    * fix menus offsets

    * move version info

commit 244e7268c91a42d2dcfb9da61bc28f2b6b423689
Merge: 60326cf 836510a
Author: Joe Heffernan <[email protected]>
Date:   Wed Oct 11 13:32:07 2023 -0700

    Merge pull request #423 from simularium/feature/version-info

    Feature/version info

commit 836510a92366a61ef1dbc455f17838f92a638322
Author: Joe Heffernan <[email protected]>
Date:   Wed Oct 11 11:47:54 2023 -0700

    Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

commit caac57be991dc3dfaf79ff426e13ba6854c6ab03
Author: Joe Heffernan <[email protected]>
Date:   Tue Oct 10 12:51:42 2023 -0700

    prevent bg color change after click

commit 23be0d4f7ed526a3853889940727a9dd21cbbc19
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 15:27:12 2023 -0700

    typo

commit 141b0370f42b3ee2b4345d56fe2e4db9e6fff2ab
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:34:44 2023 -0700

    remove comments

commit 8dcccc1a3688e7528923670aa8f0611ae7283376
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:34:28 2023 -0700

    styling update

commit 4c215c7ab876e546ec546b3712d88a83cfa79393
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:14:01 2023 -0700

    remove commented code

commit 72c2e8d2ab548ee36829775a608e0dda5d3116f4
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:10:35 2023 -0700

    remove unneeded jsx fragment wrappers

commit dcff5c8b8fd4842b72e53e100c76e1b79d23c178
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:27:55 2023 -0700

    removing logs

commit 3e9d57898ff065c37ea5bc2dcacf9deda19442af
Author: Joe Heffernan <[email protected]>
Date:   Tue May 23 10:56:42 2023 -0700

    menu item and modal

commit 60326cfa9649737d21bae5388626c5fd1bfa0d65
Author: Lyndsay <[email protected]>
Date:   Mon Oct 9 12:57:20 2023 -0700

    Update ux_issue.md (#433)

commit 72f1a233d73b64eabc86b30426cace6c727bee2c
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Oct 9 12:57:08 2023 -0700

    change check for if a file is shareable (#439)

    * change check for if a file is shareable

    * use constant for trajFileName

    * use selector instead of type guard

    * add unit test

    * remove accidental auto import

commit 67f2f582cffb3537bd1d47ad37caf0866f1137bf
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu Oct 5 13:28:50 2023 -0700

    audit fix (#437)

commit af14d0126f590813ee1afab5ec39ad1b91727235
Merge: 1314eed a78dee4
Author: Joe Heffernan <[email protected]>
Date:   Fri Sep 8 14:50:10 2023 -0700

    Merge pull request #430 from simularium/feature/orthographic-ui

    Feature/orthographic UI

commit a78dee40c3be10ee554e2e13e0aef260845d4775
Author: Joe Heffernan <[email protected]>
Date:   Fri Sep 8 09:21:09 2023 -0700

    rename set camera

commit 49598cce511597bd3a4e0c15d55349f20ffb5226
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 28 19:00:29 2023 -0700

    install new viewer version

commit d5b84407f5bcb81e3d7391b14ee69d286a0d4924
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 17 16:16:45 2023 -0700

    remove redundant ternary

commit aa0fc41db95e9c76ee400f8f8a236d9acc23bd02
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 17 16:15:09 2023 -0700

    orth/persp icons swapped

commit 1b92d704738a9cee82e5b102f46890790d72d23c
Author: Joe Heffernan <[email protected]>
Date:   Wed Aug 16 13:50:33 2023 -0700

    fix button exceeding border

commit 4969ca95427ba0ba1901cd8950eab975cd28a636
Merge: 29137a3 1314eed
Author: Joe Heffernan <[email protected]>
Date:   Wed Aug 16 13:28:05 2023 -0700

    Merge branch 'main' into feature/orthographic-ui
    merging main

commit 29137a35c6bc9bc8b03c2da7c639da36d390a3ed
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 14 13:01:55 2023 -0700

    playback control styling

commit 8756d054f27ed2c5e14af0d2f0f9410e81a9dd53
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 14 13:00:59 2023 -0700

    focus:hover state on home button

commit 4506ce9a66fd55978cbdc27d4bf08dbacce98fcb
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:26:56 2023 -0700

    define viewer button color variables

commit f3cc830f8f9aa341b57a7da9459ab2cbab7d63ed
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:25:50 2023 -0700

    ortho/perspective icons

commit b23d847486f97313b163895ca4fdd28014e9ea7a
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:25:26 2023 -0700

    initial styling of camera controls

commit fab18400bbefc0d77ec38c9654abd061da539b7f
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:23:15 2023 -0700

    implement orthographic camera

commit 1314eed2438057c99f4781aea5701ae030073435
Merge: 2c949aa b9c37b2
Author: Joe Heffernan <[email protected]>
Date:   Thu Jul 20 16:37:06 2023 -0700

    Merge pull request #424 from simularium/feature/share-time-url

    Feature/share time url

commit b9c37b25a5b0b204b038bc30f3273462667b6f4c
Author: Joe Heffernan <[email protected]>
Date:   Thu Jul 20 13:19:13 2023 -0700

    tooltip handler edit, fix alignment on time input

commit 2c949aa0dd71ddd3910a7b388ae31dcf67d4677e
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Jul 17 14:56:28 2023 -0700

    Update CODEOWNERS

commit 81bce369c106e6c1988086b36c98667297e917f5
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Jul 11 16:17:20 2023 -0700

    change gh-deploy to be a dev build (#426)

commit 01468c302c6036a6b2f8e1f94912cd5514367c23
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Jul 11 16:17:03 2023 -0700

    Update CONTRIBUTING.md (#425)

commit 5ad5660739b4d9146248ef761373c4a45d81c725
Merge: 0b79159 5dda5da
Author: meganrm <[email protected]>
Date:   Tue Jun 27 17:41:25 2023 -0700

    Merge branch 'feature/share-time-url' of https://github.com/simularium/simularium-website into feature/share-time-url

commit 0b791599d674a611fc8b51e723459cdb476253cf
Author: meganrm <[email protected]>
Date:   Tue Jun 27 17:41:18 2023 -0700

    reduce annotations

commit 5dda5da83e2ce5916053e73c6db3221f9be5ae5c
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 15:13:51 2023 -0700

    update return type receiveTimeChange

commit 5113dfe6354ca147638230ad1a826749089df6df
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 13:57:59 2023 -0700

    update test

commit 1e226e8568f770b1da7bb55de34c91637f45988e
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 13:48:29 2023 -0700

    test for editUrlParams and clean up

commit b93f789f62b53ff63071d1fefc1efc2de04990fd
Author: meganrm <[email protected]>
Date:   Tue Jun 27 12:19:00 2023 -0700

    changed names of functions

commit 6dfe513646e789a4e1b974c27baa0d94b276db79
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:58:00 2023 -0700

    gh actions from ubuntu to macos

commit 1d1b73acbb480ab348ef122ac73e9bae5496b789
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:57:14 2023 -0700

    add jest coverage reporters

commit 9a62549b0ac8603734d1dc8f9e8d83c6a53460cf
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:50:41 2023 -0700

    update jest

commit d58b4c6d8140ded3934014caf0bec8a5a2bf97b8
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:48:56 2023 -0700

    update jest coverage

commit 0da60eba553c7963e7dc1da32cac2835d0c6614e
Author: Joe Heffernan <[email protected]>
Date:   Mon Jun 26 12:15:10 2023 -0700

    ternary -> object, styling names, add href

commit b0f81cef84ae7de2b29cc537d132a5305e33f521
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 23 15:17:45 2023 -0700

    initial unit test

commit ecb0b9af9424f61628ab905d14c813490be407bd
Merge: fb2a54f 918556c
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:48:15 2023 -0700

    Merge branch 'main' into feature/share-time-url

commit fb2a54fd82bbaabe469777d48d4e05f7e893a347
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:11:04 2023 -0700

    space share and download buttons

commit 0245f777780f49d9f228313ce194c347904f985a
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:07:33 2023 -0700

    move tooltip

commit f92904682d012882b6c4da3263716d0e07f5d308
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 04deea2157e7f2a24f1784bb5401629955c1c6a2
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit ee811e772efbd977f06c0a0c6a4684a1946f4ffc
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 9e177810a6ba3ef44bb156dcf953bc45e0ce45aa
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit 2166dc1d9bdcf5b6758990b74cad2cd9f6d38a3b
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 820afcab6247673362326e568b893e83dc1d59f6
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit ce60a9d48719915b05311eada47c512983952487
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 41ea8875e6f5389cc0007951b2e1c827ee35d577
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit 305955e3752d46981780046fdb9fee9ab27c68b8
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 20 15:48:53 2023 -0700

    move tooltip and unessary async

commit 6b21353a71def1829d825ac62613aa74f4d9cdac
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:06:24 2023 -0700

    remove comment

commit f794da1d1ceb797420f074ca3843df286299a429
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:41:10 2023 -0700

    removing isDownloading

commit 70db90b4cd5951d005a30bd0b94e3222d5b64d19
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:29:04 2023 -0700

    removing styling typo

commit 5b516c044054ef0fa9046c21fc2047e9ae026449
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:29:15 2023 -0700

    clean up comment

commit 8c2ac5e02225ff63e0cba32f6006fbc8f80f87aa
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 10:36:47 2023 -0700

    use viewer getasblob method, bump viewer

commit a1dfdb1d9e774e79a1bf9cacd765e59f62ece676
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu May 18 22:23:10 2023 +0000

    use href for direct download if remote file

commit b2e1bad5aaeb4d23454e539667c73250199bf62d
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:56:07 2023 -0700

    removing comments

commit 8ff2ad88358540251c55d21610ef599913342489
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:51:47 2023 -0700

    disable button during downloading

commit 4448920df8e72875244e14f3c44b7c3a0a5fdd53
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:04:22 2023 -0700

    cleaning

commit 2a7b3d18da5b9df45ff4ac2bddf4806bb060b8f9
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:03:06 2023 -0700

    cleanup

commit 00fcfb43689221e1725e0413679161c4753e3f07
Author: Joe Heffernan <[email protected]>
Date:   Thu May 4 11:53:55 2023 -0700

    styling, adding pipe divider

commit dbd6322e7de895ce4779716e6b3afd5fbab31c89
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 14:04:03 2023 -0700

    added download functionality

commit 13d0057ef7ee76beb57b5895fae42b015567f438
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 09:15:09 2023 -0700

    intial ui components

commit 918556ca7c6d40c8637ceaaf9d01ff77ccd9ed3d
Merge: 0749f1a f995097
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 09:12:17 2023 -0700

    Merge pull request #422 from simularium/feature/download-trajectory

    Feature/download trajectory

commit f99509782c90e51caf8cf78517c691ab3de77f7f
Merge: 39a70ca 0749f1a
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 09:09:55 2023 -0700

    Merge branch 'main' into feature/download-trajectory

commit 39a70cad2a44f4bdb6e6ef2eddf85599b71bddb7
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 8319dc779d2cf137aff0e7f5c4757c2cb34abf4e
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit 054e67082861884e502f3033744dba9ba1d4dd3e
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit cec3e9b962543131f7d07302c8b2c100c31c3b3f
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit bb103348d65bc9c1bb52fc3317da62fa206e6fe7
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 20 15:48:53 2023 -0700

    move tooltip and unessary async

commit 79938891b2d395ccc96bc451294982c0d74ad5e6
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 15:24:34 2023 -0700

    remove redundant action from reducer

commit 67a2a63d92d149796577d4ad07ae1ab001db84fc
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 15:22:33 2023 -0700

    remove blue text class

commit 225ebfd1395622c5b5a27e7b721c787c3f08ecc3
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 14:52:42 2023 -0700

    shift style rules, add light theme, remove buffer

commit 0749f1aba62d01e67e9fd0597acff8c35bcc9796
Merge: cc135e8 ac22916
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 15:58:13 2023 -0700

    Merge pull request #417 from simularium/feature/updated-looping-playback

    looping playback and tooltip styling

commit 96eca5c5ea728864f9b06f72fed6cc3ec3dcf919
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 10:30:15 2023 -0700

    clean up

commit f2ba682ece52baa2b4e3e8a9748976e600a10a5b
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 10:09:16 2023 -0700

    consolidate redundant functions

commit 57c1e4ec760608af66a43dfe5fc051249d7068a0
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 09:56:47 2023 -0700

    move clear and rest params to utils

commit b5a9bbe0e8c9d8f548e363cfd6e199d2a0bb5214
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 17:37:34 2023 -0700

    clear old params before setting url

commit 8f668d6aa689bc9cefec45223c1265ba58f427fc
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 13:54:24 2023 -0700

    cleaning

commit 7a954ca0fdc7449e5b6641d23733be5374a6db21
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 13:52:52 2023 -0700

    mapping prop to dispatch

commit 8b8aa1b56518b4a8379d3e8e0c2f83bd39e2d828
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 10:22:02 2023 -0700

    update viewer

commit c8bb39919f303dac6a575a5c2f032ac8c6fc59bb
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:06:24 2023 -0700

    remove comment

commit 164a6c0e7e35793fc809a4b003efd3bd16c5669c
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:02:57 2023 -0700

    remove unused imports

commit 3a8920090074be8989d7e26a56c4cd98bf3e6025
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:00:09 2023 -0700

    hover styling

commit 63013b0ba79a0f86eb6faa486c317a1cb87d3672
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:17:22 2023 -0700

    nested ternary -> if/else

commit ac22916ede152783b20d6daea533708afd79cc64
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 903c09ef28f09b4d764387c630f494840f51d88f
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 6 16:25:41 2023 -0700

    add util func, move logic trigger to viewer panel

    Co-authored-by: Megan Riel-Mehan <[email protected]>

commit c1d63648b33f26239bc0c6dbcf10c8ab40d3fe29
Author: Joe Heffernan <[email protected]>
Date:   Mon Jun 5 09:09:44 2023 -0700

    update viewer version

commit 48537b5658b6097bd676af4927a1219fbfe681a8
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:41:10 2023 -0700

    removing isDownloading

commit e14f33214b9686cafc3efab3c20f250ee1f1d583
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:29:04 2023 -0700

    removing styling typo

commit c87f78b4ec209ee227b70be3925774fb1c75d715
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:29:15 2023 -0700

    clean up comment

commit d2f56914693f27febf85353816c13bd1dc70d15d
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 10:36:47 2023 -0700

    use viewer getasblob method, bump viewer

commit 73bba1a3917ec6a39e38422cb1f1d8a1110a1b6d
Author: Joe Heffernan <[email protected]>
Date:   Wed May 31 10:58:46 2023 -0700

    update viewer

commit e5a1a701236c89ee8d389591cc941a2c13cb08dc
Author: Joe Heffernan <[email protected]>
Date:   Tue May 23 15:09:04 2023 -0700

    refactor to use displayTimes

commit 43913670e5f6ad460c6785a8a92cdb09be086612
Author: Joe Heffernan <[email protected]>
Date:   Mon May 22 13:06:31 2023 -0700

    truncating decimals in url

commit c06702d8efd9f681b727c2c38eac090a22f70836
Author: Joe Heffernan <[email protected]>
Date:   Fri May 19 14:53:02 2023 -0700

    rename components and clean up functions

commit 6a5ed732537cef510276bb47002601416ce741de
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu May 18 22:23:10 2023 +0000

    use href for direct download if remote file

commit 9e50b00371b6d0edd98f266ac83c233154551932
Author: Joe Heffernan <[email protected]>
Date:   Thu May 18 13:18:43 2023 -0700

    ui components for share time in url

commit 12836f56003ddd94a6aadd28e222321ea16f9a80
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:56:07 2023 -0700

    removing comments

commit d6ebc41a3d198bfa8555b20361215301f585176d
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit 84b3681848c758bf7fb686240eda0b815185845e
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:51:47 2023 -0700

    disable button during downloading

commit 6a14428d4d4f2910a970f4b235b5f56966b4a7f6
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:04:22 2023 -0700

    cleaning

commit 2faf8d2f441f470587b425f6fb5cdb55b9cbb76e
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:03:06 2023 -0700

    cleanup

commit e318c4df11cad4f3620a135cbb6af2566cc55c2c
Author: Joe Heffernan <[email protected]>
Date:   Thu May 4 11:53:55 2023 -0700

    styling, adding pipe divider

commit 3538d1f15a7769f9c5f4aee54fc5db98b533e685
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 14:04:03 2023 -0700

    added download functionality

commit 57b5c1f6c656de73a04e8b7f2ad9eecd199e28bf
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 09:15:09 2023 -0700

    intial ui components

commit f320abe8ea3d6af93839ddd7fe244e6f7eab1960
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 0221067a635450acdef9bcbf335f30b4a80e40df
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit cc135e814a78a547edef31bcee688c35e9068112
Author: ascibisz <[email protected]>
Date:   Fri Apr 21 13:53:12 2023 -0700

    update version for add-to-project action

commit ec1b5f0f741f6abab276736f913d4e388698f21a
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Apr 18 12:13:10 2023 -0700

    Update CODEOWNERS

commit dbe5b585a8a6e56d383cc38ee1f73a40c705e484
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Apr 10 11:07:06 2023 -0700

    Bump json5 from 1.0.1 to 1.0.2 (#404)

    Bumps [json5](https://github.com/json5/json5) from 1.0.1 to 1.0.2.
    - [Release notes](https://github.com/json5/json5/releases)
    - [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
    - [Commits](https://github.com/json5/json5/compare/v1.0.1...v1.0.2)

    ---
    updated-dependencies:
    - dependency-name: json5
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Squashed commit of the following:

commit f3527626a0e12b131ef7c551785e6f95cbbf6b95
Author: Joe Heffernan <[email protected]>
Date:   Wed Feb 14 17:42:55 2024 -0800

    Fix/bump react (#461)

    * bump react, react-waypoint, react dom, @types/react

    * declare children in sider and upload props for react 18 compatibility

    * bump @types/react-dom

    * use createRoot API to render App

    * commit lock file

    * bump to viewer 3.7.0 with react 18

    * use non-null assertion on container in createRoot call

commit 39a6f7b7e63206bf842d9f74b6f8098d4973c86c
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jan 29 19:28:31 2024 -0800

    Bump follow-redirects from 1.15.2 to 1.15.4 (#460)

    Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.15.2 to 1.15.4.
    - [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
    - [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.15.2...v1.15.4)

    ---
    updated-dependencies:
    - dependency-name: follow-redirects
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 6b26307fb3ea8151e2718f95e01047da67ed5db3
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jan 29 19:28:19 2024 -0800

    Bump plotly.js from 2.20.0 to 2.25.2 (#457)

    Bumps [plotly.js](https://github.com/plotly/plotly.js) from 2.20.0 to 2.25.2.
    - [Release notes](https://github.com/plotly/plotly.js/releases)
    - [Changelog](https://github.com/plotly/plotly.js/blob/master/CHANGELOG.md)
    - [Commits](https://github.com/plotly/plotly.js/compare/v2.20.0...v2.25.2)

    ---
    updated-dependencies:
    - dependency-name: plotly.js
      dependency-type: direct:production
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 38dda7c1349d8e044c70c839d6c8bb18eedbf34f
Author: Joe Heffernan <[email protected]>
Date:   Thu Jan 4 10:27:17 2024 -0800

    open aics homepage in new tab (#454)

commit 106935b771feebabf47c0b3912a58c7068e49ab0
Author: Joe Heffernan <[email protected]>
Date:   Tue Dec 19 11:51:35 2023 -0800

    Feature/color picker (#432)

    * initial components and styling

    * shrink checkbox to expose swatch

    * shrink chexbox to make swatch clickable

    * pass data into color swatch

    * remove unused styling

    * handleColorChange in picker

    * pass props and helders to color picker modal

    * add colorPicker to color swatch

    * types actions constants selectors for colorChanges

    * selector in viewer panel

    * preserve initial color in swatch

    * style parent swatch when children dont match

    * recent colors into redux

    * change modal to popover

    * update import

    * clean up stylesheets

    * tidy css and imports

    * bump viewer version

    * remove extra ?

    * update viewer

    * viewerpanel selector test update

    * update dependecies

    * add tests for getColorChanges

    * fix type imports in selectors

    * web app version

    * remove comment

    * consolidate colorpicker and popover

    * organize props and style rules

    * pointer on color swatch

    * formatting

    * color picker tooltip color to constant

    * swap replace for slice

    * debounce color selection

    * implement orthographic camera

    * initial styling of camera controls

    * ortho/perspective icons

    * define viewer button color variables

    * focus:hover state on home button

    * playback control styling

    * fix button exceeding border

    * orth/persp icons swapped

    * remove redundant ternary

    * rename set camera

    * audit fix (#437)

    * change check for if a file is shareable (#439)

    * change check for if a file is shareable

    * use constant for trajFileName

    * use selector instead of type guard

    * add unit test

    * remove accidental auto import

    * Update ux_issue.md (#433)

    * menu item and modal

    * removing logs

    * remove unneeded jsx fragment wrappers

    * remove commented code

    * styling update

    * remove comments

    * typo

    * prevent bg color change after click

    * Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

    * fix menus offsets (#440)

    * fix menus offsets

    * move version info

    * update viewer to 3.6.3

    * update viewer and fix types (#445)

    * 0.10.0

    * remove redunant line

    * implement orthographic camera

    * initial styling of camera controls

    * define viewer button color variables

    * focus:hover state on home button

    * playback control styling

    * orth/persp icons swapped

    * remove redundant ternary

    * install new viewer version

    * rename set camera

    * menu item and modal

    * removing logs

    * remove unneeded jsx fragment wrappers

    * remove commented code

    * styling update

    * remove comments

    * typo

    * Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

    * fix menus offsets (#440)

    * fix menus offsets

    * move version info

    * update viewer to 3.6.3

    * update viewer and fix types (#445)

    * pass down actions from model panel to picker

    * add hover state rules

    * pass in debouncedColor

    * [to undo] - local install

    * remove colorChangesMap

    * prevent color assignment on first opening picker

    * fix typing and save all color changes

    * make color change an object

    * install

    * store colors for correct rendering

    * add a done call

    * change interface

    * install viewer

    * update viewer

    * remove old style sheet

    * clean up styles and change order on parents

    * style children selection row

    * style labels

    * style sub menu better

    * clean up styles

    * revert change

    * make sure colors are consistently cased

    * fix imports

    * wip - not have popover move up

    * remove color swatch component and get color picker aligned with swatch

    * flx classnames

    * fix typo

    * fix checkall button

    * fix classname

    * make render functions for colorpicker

    * keep swatch constant until color is set, change label to "previous"

    * adjusting labels

    * Update src/components/CheckBoxTree/style.css

    Co-authored-by: Peyton Lee <[email protected]>

    * rename colors

    * sync children remove log

    * Fix/viewer imports (#453)

    * fix imports to be from the top level

    * update viewer

    * Update src/components/SharedCheckbox/style.css

    Co-authored-by: Cameron Fraser <[email protected]>

    * remove return

    * clean up styling

    * change names of checkboxtree components

    ---------

    Co-authored-by: Megan Riel-Mehan <[email protected]>
    Co-authored-by: Lyndsay <[email protected]>
    Co-authored-by: Blair Lyons <[email protected]>
    Co-authored-by: Peyton Lee <[email protected]>
    Co-authored-by: Cameron Fraser <[email protected]>

commit 7bfdc1f9a394bd67ea56f8ff40ca63b2e290fab4
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Fri Dec 8 14:21:10 2023 -0800

    Bump @adobe/css-tools from 4.3.1 to 4.3.2 (#449)

    Bumps [@adobe/css-tools](https://github.com/adobe/css-tools) from 4.3.1 to 4.3.2.
    - [Changelog](https://github.com/adobe/css-tools/blob/main/History.md)
    - [Commits](https://github.com/adobe/css-tools/commits)

    ---
    updated-dependencies:
    - dependency-name: "@adobe/css-tools"
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 37a5fee141d3b523fb6de69642c2119a84615558
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 14:18:05 2023 -0800

    Update test-coverage.yml

commit f9267547f03c707b4cf3c91130658b78e35da67c
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 14:15:46 2023 -0800

    Update test-coverage.yml

commit 16de0a0461fb7e9107fa1e0ea3bda52472e83aaa
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Fri Dec 8 14:03:32 2023 -0800

    Bump axios from 0.21.4 to 1.6.0 (#447)

    Bumps [axios](https://github.com/axios/axios) from 0.21.4 to 1.6.0.
    - [Release notes](https://github.com/axios/axios/releases)
    - [Changelog](https://github.com/axios/axios/blob/v1.x/CHANGELOG.md)
    - [Commits](https://github.com/axios/axios/compare/v0.21.4...v1.6.0)

    ---
    updated-dependencies:
    - dependency-name: axios
      dependency-type: direct:production
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    Co-authored-by: meganrm <[email protected]>

commit 8fad286617be73b7b03ac9b108c8b2eef1bc203d
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Dec 8 13:53:25 2023 -0800

    check if it's a dependabot PR (#450)

commit 4d149c8b99e72959d9ac2ff001efc5cf314d9661
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Dec 4 13:35:30 2023 -0800

    Bump @babel/traverse from 7.20.5 to 7.23.2 (#442)

    Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.20.5 to 7.23.2.
    - [Release notes](https://github.com/babel/babel/releases)
    - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
    - [Commits](https://github.com/babel/babel/commits/v7.23.2/packages/babel-traverse)

    ---
    updated-dependencies:
    - dependency-name: "@babel/traverse"
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit b432dff1b97833e5bfc94e9b5cac7dc0fbb19711
Author: Joe Heffernan <[email protected]>
Date:   Wed Nov 29 13:34:18 2023 -0800

    Fix/share download styling (#448)

    * add color

    * remove pipe and fix button order

    * fix download button styling

    * fix share button styling

    * remove whitespace

    * change hover state selector to sync with tooltip

    * turn functions to boolean constants

    * streamline tooltip constants

    * move btn styles to appheader

commit c6eaea3d3c81c88c240ee1e8c1e4825d8fe5545e
Author: Blair Lyons <[email protected]>
Date:   Mon Oct 23 11:06:47 2023 -0700

    0.10.0

commit f13dcb01b32c16f2d0f5853c7f890ab566a06244
Author: Megan Riel-Mehan <[email protected]>
Date:   Fri Oct 20 12:46:48 2023 -0700

    update viewer and fix types (#445)

commit 4baff29420c6a06647a08b5c57e64ad88ad09a86
Author: Blair Lyons <[email protected]>
Date:   Thu Oct 19 14:49:46 2023 -0700

    update viewer to 3.6.3

commit ca5ac248433cc26a66fa09a546332cae8d80c2b5
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Oct 16 10:41:45 2023 -0700

    fix menus offsets (#440)

    * fix menus offsets

    * move version info

commit 244e7268c91a42d2dcfb9da61bc28f2b6b423689
Merge: 60326cf 836510a
Author: Joe Heffernan <[email protected]>
Date:   Wed Oct 11 13:32:07 2023 -0700

    Merge pull request #423 from simularium/feature/version-info

    Feature/version info

commit 836510a92366a61ef1dbc455f17838f92a638322
Author: Joe Heffernan <[email protected]>
Date:   Wed Oct 11 11:47:54 2023 -0700

    Update src/components/HelpMenu/index.tsx

    Co-authored-by: Megan Riel-Mehan <[email protected]>

commit caac57be991dc3dfaf79ff426e13ba6854c6ab03
Author: Joe Heffernan <[email protected]>
Date:   Tue Oct 10 12:51:42 2023 -0700

    prevent bg color change after click

commit 23be0d4f7ed526a3853889940727a9dd21cbbc19
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 15:27:12 2023 -0700

    typo

commit 141b0370f42b3ee2b4345d56fe2e4db9e6fff2ab
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:34:44 2023 -0700

    remove comments

commit 8dcccc1a3688e7528923670aa8f0611ae7283376
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:34:28 2023 -0700

    styling update

commit 4c215c7ab876e546ec546b3712d88a83cfa79393
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:14:01 2023 -0700

    remove commented code

commit 72c2e8d2ab548ee36829775a608e0dda5d3116f4
Author: Joe Heffernan <[email protected]>
Date:   Mon Oct 9 14:10:35 2023 -0700

    remove unneeded jsx fragment wrappers

commit dcff5c8b8fd4842b72e53e100c76e1b79d23c178
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:27:55 2023 -0700

    removing logs

commit 3e9d57898ff065c37ea5bc2dcacf9deda19442af
Author: Joe Heffernan <[email protected]>
Date:   Tue May 23 10:56:42 2023 -0700

    menu item and modal

commit 60326cfa9649737d21bae5388626c5fd1bfa0d65
Author: Lyndsay <[email protected]>
Date:   Mon Oct 9 12:57:20 2023 -0700

    Update ux_issue.md (#433)

commit 72f1a233d73b64eabc86b30426cace6c727bee2c
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Oct 9 12:57:08 2023 -0700

    change check for if a file is shareable (#439)

    * change check for if a file is shareable

    * use constant for trajFileName

    * use selector instead of type guard

    * add unit test

    * remove accidental auto import

commit 67f2f582cffb3537bd1d47ad37caf0866f1137bf
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu Oct 5 13:28:50 2023 -0700

    audit fix (#437)

commit af14d0126f590813ee1afab5ec39ad1b91727235
Merge: 1314eed a78dee4
Author: Joe Heffernan <[email protected]>
Date:   Fri Sep 8 14:50:10 2023 -0700

    Merge pull request #430 from simularium/feature/orthographic-ui

    Feature/orthographic UI

commit a78dee40c3be10ee554e2e13e0aef260845d4775
Author: Joe Heffernan <[email protected]>
Date:   Fri Sep 8 09:21:09 2023 -0700

    rename set camera

commit 49598cce511597bd3a4e0c15d55349f20ffb5226
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 28 19:00:29 2023 -0700

    install new viewer version

commit d5b84407f5bcb81e3d7391b14ee69d286a0d4924
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 17 16:16:45 2023 -0700

    remove redundant ternary

commit aa0fc41db95e9c76ee400f8f8a236d9acc23bd02
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 17 16:15:09 2023 -0700

    orth/persp icons swapped

commit 1b92d704738a9cee82e5b102f46890790d72d23c
Author: Joe Heffernan <[email protected]>
Date:   Wed Aug 16 13:50:33 2023 -0700

    fix button exceeding border

commit 4969ca95427ba0ba1901cd8950eab975cd28a636
Merge: 29137a3 1314eed
Author: Joe Heffernan <[email protected]>
Date:   Wed Aug 16 13:28:05 2023 -0700

    Merge branch 'main' into feature/orthographic-ui
    merging main

commit 29137a35c6bc9bc8b03c2da7c639da36d390a3ed
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 14 13:01:55 2023 -0700

    playback control styling

commit 8756d054f27ed2c5e14af0d2f0f9410e81a9dd53
Author: Joe Heffernan <[email protected]>
Date:   Mon Aug 14 13:00:59 2023 -0700

    focus:hover state on home button

commit 4506ce9a66fd55978cbdc27d4bf08dbacce98fcb
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:26:56 2023 -0700

    define viewer button color variables

commit f3cc830f8f9aa341b57a7da9459ab2cbab7d63ed
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:25:50 2023 -0700

    ortho/perspective icons

commit b23d847486f97313b163895ca4fdd28014e9ea7a
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:25:26 2023 -0700

    initial styling of camera controls

commit fab18400bbefc0d77ec38c9654abd061da539b7f
Author: Joe Heffernan <[email protected]>
Date:   Thu Aug 10 12:23:15 2023 -0700

    implement orthographic camera

commit 1314eed2438057c99f4781aea5701ae030073435
Merge: 2c949aa b9c37b2
Author: Joe Heffernan <[email protected]>
Date:   Thu Jul 20 16:37:06 2023 -0700

    Merge pull request #424 from simularium/feature/share-time-url

    Feature/share time url

commit b9c37b25a5b0b204b038bc30f3273462667b6f4c
Author: Joe Heffernan <[email protected]>
Date:   Thu Jul 20 13:19:13 2023 -0700

    tooltip handler edit, fix alignment on time input

commit 2c949aa0dd71ddd3910a7b388ae31dcf67d4677e
Author: Megan Riel-Mehan <[email protected]>
Date:   Mon Jul 17 14:56:28 2023 -0700

    Update CODEOWNERS

commit 81bce369c106e6c1988086b36c98667297e917f5
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Jul 11 16:17:20 2023 -0700

    change gh-deploy to be a dev build (#426)

commit 01468c302c6036a6b2f8e1f94912cd5514367c23
Author: Megan Riel-Mehan <[email protected]>
Date:   Tue Jul 11 16:17:03 2023 -0700

    Update CONTRIBUTING.md (#425)

commit 5ad5660739b4d9146248ef761373c4a45d81c725
Merge: 0b79159 5dda5da
Author: meganrm <[email protected]>
Date:   Tue Jun 27 17:41:25 2023 -0700

    Merge branch 'feature/share-time-url' of https://github.com/simularium/simularium-website into feature/share-time-url

commit 0b791599d674a611fc8b51e723459cdb476253cf
Author: meganrm <[email protected]>
Date:   Tue Jun 27 17:41:18 2023 -0700

    reduce annotations

commit 5dda5da83e2ce5916053e73c6db3221f9be5ae5c
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 15:13:51 2023 -0700

    update return type receiveTimeChange

commit 5113dfe6354ca147638230ad1a826749089df6df
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 13:57:59 2023 -0700

    update test

commit 1e226e8568f770b1da7bb55de34c91637f45988e
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 13:48:29 2023 -0700

    test for editUrlParams and clean up

commit b93f789f62b53ff63071d1fefc1efc2de04990fd
Author: meganrm <[email protected]>
Date:   Tue Jun 27 12:19:00 2023 -0700

    changed names of functions

commit 6dfe513646e789a4e1b974c27baa0d94b276db79
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:58:00 2023 -0700

    gh actions from ubuntu to macos

commit 1d1b73acbb480ab348ef122ac73e9bae5496b789
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:57:14 2023 -0700

    add jest coverage reporters

commit 9a62549b0ac8603734d1dc8f9e8d83c6a53460cf
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:50:41 2023 -0700

    update jest

commit d58b4c6d8140ded3934014caf0bec8a5a2bf97b8
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 27 11:48:56 2023 -0700

    update jest coverage

commit 0da60eba553c7963e7dc1da32cac2835d0c6614e
Author: Joe Heffernan <[email protected]>
Date:   Mon Jun 26 12:15:10 2023 -0700

    ternary -> object, styling names, add href

commit b0f81cef84ae7de2b29cc537d132a5305e33f521
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 23 15:17:45 2023 -0700

    initial unit test

commit ecb0b9af9424f61628ab905d14c813490be407bd
Merge: fb2a54f 918556c
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:48:15 2023 -0700

    Merge branch 'main' into feature/share-time-url

commit fb2a54fd82bbaabe469777d48d4e05f7e893a347
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:11:04 2023 -0700

    space share and download buttons

commit 0245f777780f49d9f228313ce194c347904f985a
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 13:07:33 2023 -0700

    move tooltip

commit f92904682d012882b6c4da3263716d0e07f5d308
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 04deea2157e7f2a24f1784bb5401629955c1c6a2
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit ee811e772efbd977f06c0a0c6a4684a1946f4ffc
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 9e177810a6ba3ef44bb156dcf953bc45e0ce45aa
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit 2166dc1d9bdcf5b6758990b74cad2cd9f6d38a3b
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 820afcab6247673362326e568b893e83dc1d59f6
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit ce60a9d48719915b05311eada47c512983952487
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit 41ea8875e6f5389cc0007951b2e1c827ee35d577
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit 305955e3752d46981780046fdb9fee9ab27c68b8
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 20 15:48:53 2023 -0700

    move tooltip and unessary async

commit 6b21353a71def1829d825ac62613aa74f4d9cdac
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:06:24 2023 -0700

    remove comment

commit f794da1d1ceb797420f074ca3843df286299a429
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:41:10 2023 -0700

    removing isDownloading

commit 70db90b4cd5951d005a30bd0b94e3222d5b64d19
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 14:29:04 2023 -0700

    removing styling typo

commit 5b516c044054ef0fa9046c21fc2047e9ae026449
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 11:29:15 2023 -0700

    clean up comment

commit 8c2ac5e02225ff63e0cba32f6006fbc8f80f87aa
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 1 10:36:47 2023 -0700

    use viewer getasblob method, bump viewer

commit a1dfdb1d9e774e79a1bf9cacd765e59f62ece676
Author: Megan Riel-Mehan <[email protected]>
Date:   Thu May 18 22:23:10 2023 +0000

    use href for direct download if remote file

commit b2e1bad5aaeb4d23454e539667c73250199bf62d
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:56:07 2023 -0700

    removing comments

commit 8ff2ad88358540251c55d21610ef599913342489
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:51:47 2023 -0700

    disable button during downloading

commit 4448920df8e72875244e14f3c44b7c3a0a5fdd53
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:04:22 2023 -0700

    cleaning

commit 2a7b3d18da5b9df45ff4ac2bddf4806bb060b8f9
Author: Joe Heffernan <[email protected]>
Date:   Fri May 5 11:03:06 2023 -0700

    cleanup

commit 00fcfb43689221e1725e0413679161c4753e3f07
Author: Joe Heffernan <[email protected]>
Date:   Thu May 4 11:53:55 2023 -0700

    styling, adding pipe divider

commit dbd6322e7de895ce4779716e6b3afd5fbab31c89
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 14:04:03 2023 -0700

    added download functionality

commit 13d0057ef7ee76beb57b5895fae42b015567f438
Author: Joe Heffernan <[email protected]>
Date:   Wed May 3 09:15:09 2023 -0700

    intial ui components

commit 918556ca7c6d40c8637ceaaf9d01ff77ccd9ed3d
Merge: 0749f1a f995097
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 09:12:17 2023 -0700

    Merge pull request #422 from simularium/feature/download-trajectory

    Feature/download trajectory

commit f99509782c90e51caf8cf78517c691ab3de77f7f
Merge: 39a70ca 0749f1a
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 21 09:09:55 2023 -0700

    Merge branch 'main' into feature/download-trajectory

commit 39a70cad2a44f4bdb6e6ef2eddf85599b71bddb7
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 07:00:08 2023 -0700

    remove unused values, clean up

commit 8319dc779d2cf137aff0e7f5c4757c2cb34abf4e
Author: Joe Heffernan <[email protected]>
Date:   Wed May 10 14:25:29 2023 -0700

    remove redundant actions

commit 054e67082861884e502f3033744dba9ba1d4dd3e
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 13:45:47 2023 -0700

    removing unused imports

commit cec3e9b962543131f7d07302c8b2c100c31c3b3f
Author: Joe Heffernan <[email protected]>
Date:   Wed Apr 26 12:52:01 2023 -0700

    looping playback and tooltip styling

commit bb103348d65bc9c1bb52fc3317da62fa206e6fe7
Author: Joe Heffernan <[email protected]>
Date:   Tue Jun 20 15:48:53 2023 -0700

    move tooltip and unessary async

commit 79938891b2d395ccc96bc451294982c0d74ad5e6
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 15:24:34 2023 -0700

    remove redundant action from reducer

commit 67a2a63d92d149796577d4ad07ae1ab001db84fc
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 15:22:33 2023 -0700

    remove blue text class

commit 225ebfd1395622c5b5a27e7b721c787c3f08ecc3
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 14 14:52:42 2023 -0700

    shift style rules, add light theme, remove buffer

commit 0749f1aba62d01e67e9fd0597acff8c35bcc9796
Merge: cc135e8 ac22916
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 15:58:13 2023 -0700

    Merge pull request #417 from simularium/feature/updated-looping-playback

    looping playback and tooltip styling

commit 96eca5c5ea728864f9b06f72fed6cc3ec3dcf919
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 10:30:15 2023 -0700

    clean up

commit f2ba682ece52baa2b4e3e8a9748976e600a10a5b
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 10:09:16 2023 -0700

    consolidate redundant functions

commit 57c1e4ec760608af66a43dfe5fc051249d7068a0
Author: Joe Heffernan <[email protected]>
Date:   Fri Jun 9 09:56:47 2023 -0700

    move clear and rest params to utils

commit b5a9bbe0e8c9d8f548e363cfd6e199d2a0bb5214
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 17:37:34 2023 -0700

    clear old params before setting url

commit 8f668d6aa689bc9cefec45223c1265ba58f427fc
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 13:54:24 2023 -0700

    cleaning

commit 7a954ca0fdc7449e5b6641d23733be5374a6db21
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 13:52:52 2023 -0700

    mapping prop to dispatch

commit 8b8aa1b56518b4a8379d3e8e0c2f83bd39e2d828
Author: Joe Heffernan <[email protected]>
Date:   Thu Jun 8 10:22:02 2023 -0700

    update viewer

commit c8bb39919f303dac6a575a5c2f032ac8c6fc59bb
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:06:24 2023 -0700

    remove comment

commit 164a6c0e7e35793fc809a4b003efd3bd16c5669c
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:02:57 2023 -0700

    remove unused imports

commit 3a8920090074be8989d7e26a56c4cd98bf3e6025
Author: Joe Heffernan <[email protected]>
Date:   Wed Jun 7 08:00:09 2023 -0700

    hover styling

commit 63013b0ba79a0f86eb6faa486c317a1cb87d3672
Author: Joe Heffernan <[email protected]>
Date:   W…

Loading branch information

9 people authored May 23, 2024

1 parent 49a091f commit 7182f54

src/components/DownloadTrajectoryMenu/index.tsx

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -1,7 +1,7 @@
  
    import React from "react";

    import { ISimulariumFile } from "@aics/simularium-viewer";

    import { DATA_BUCKET_URL } from "../../constants";

    import { DOWNLOAD_URL } from "../../constants";

    import { NetworkedSimFile, LocalSimFile } from "../../state/trajectory/types";

    import { Download } from "../Icons";

    import NavButtonWithTooltip from "../NavButtonWithTooltip";

    @@ -22,7 +22,7 @@ const DownloadTrajectoryMenu = ({
  
        const getHref = () => {

            if (isNetworkedFile) {

                return `${DATA_BUCKET_URL}/trajectory/${simulariumFile.name}`;

                return `${DOWNLOAD_URL}?file=${simulariumFile.name}`;

            } else {

                const localFile = simulariumFile as LocalSimFile; // isNetworkedFile checks for this

                const data: ISimulariumFile = localFile.data;

src/components/NoTrajectoriesText/NoTypeMappingText.tsx

-Original file line number
+Diff line change
@@ -1,7 +1,7 @@
     import * as React from "react";
     import { TUTORIAL_PATHNAME } from "../../routes";
-    import { DATA_BUCKET_URL } from "../../constants";
+    import { DOWNLOAD_URL } from "../../constants";
     import styles from "../NoTrajectoriesText/style.css";
@@ Expand All / @@ -11,9 +11,7 @@ const NoTypeMappingText = (): JSX.Element => { @@
                 <h3>Unable to load UI controls</h3>
                 <p>
                     Review the{" "}
-                    <a
-                        href={`${DATA_BUCKET_URL}/trajectory/endocytosis.simularium`}
-                    >
+                    <a href={`${DOWNLOAD_URL}/trajectory/endocytosis.simularium`}>
                         example data
                     </a>{" "}
                     or{" "}
@@ Expand Down @@

src/components/TutorialPage/index.tsx

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -5,7 +5,7 @@ import { Layout, Typography } from "antd";
  
    import dragDropImage from "../../assets/drag-drop.gif";

    import { VIEWER_PATHNAME } from "../../routes";

    import VisualGlossary from "../VisualGlossary";

    import { SUPPORTED_ENGINES, DATA_BUCKET_URL } from "../../constants";

    import { SUPPORTED_ENGINES, DOWNLOAD_URL } from "../../constants";

    import Footer from "../Footer";

    const { Content } = Layout;

    @@ -23,7 +23,7 @@ const TutorialPage = (): JSX.Element => {
  
                        <p className={styles.intro}>

                            To try out the Simularium Viewer, either{" "}

                            <a

                                href={`${DATA_BUCKET_URL}/trajectory/endocytosis.simularium`}

                                href={`${DOWNLOAD_URL}/trajectory/endocytosis.simularium`}

                            >

                                download

                            </a>{" "}

    @@ -48,7 +48,7 @@ const TutorialPage = (): JSX.Element => {
  
                                <li>

                                    Download the example data{" "}

                                    <a

                                        href={`${DATA_BUCKET_URL}/trajectory/endocytosis.simularium`}

                                        href={`${DOWNLOAD_URL}/trajectory/endocytosis.simularium`}

                                    >

                                        here

                                    </a>

src/constants/index.ts

-Original file line number
+Diff line change
@@ Expand Up / @@ -15,8 +15,7 @@ export const URL_PARAM_BASE_TYPES = "base_types.json"; @@
     export const URL_PARAM_CUSTOM_TYPES = "custom-types";
     // URLs
     export const BASE_API_URL = `/api/${API_VERSION}`;
-    export const DATA_BUCKET_URL =
-        "https://aics-simularium-data.s3.us-east-2.amazonaws.com";
+    export const DOWNLOAD_URL = `https://${process.env.BACKEND_SERVER_IP}:443/download`;
     export const FORUM_URL =
         "https://forum.allencell.org/c/software-code/simularium/";
     // Note that below has "/tags/" unlike FORUM_URL
@@ Expand Down @@

src/containers/ConversionForm/index.tsx

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -3,12 +3,14 @@ import { ActionCreator } from "redux";
  
    import { connect } from "react-redux";

    import { Upload, Select, Divider, Button } from "antd";

    import { UploadFile } from "antd/lib/upload";

    import { v4 as uuidv4 } from "uuid";

    import classNames from "classnames";

    import { State } from "../../state";

    import trajectoryStateBranch from "../../state/trajectory";

    import viewerStateBranch from "../../state/viewer";

    import {

        ClearSimFileDataAction,

        ConversionStatus,

        ConvertFileAction,

        InitializeConversionAction,

    @@ -41,6 +43,7 @@ interface ConversionProps {
  
        convertFile: ActionCreator<ConvertFileAction>;

        conversionStatus: ConversionStatus;

        setConversionStatus: ActionCreator<SetConversionStatusAction>;

        clearSimulariumFile: ActionCreator<ClearSimFileDataAction>;

    }

    const validFileExtensions: ExtensionMap = {

    @@ -70,6 +73,7 @@ const ConversionForm = ({
  
        conversionStatus,

        convertFile,

        setConversionStatus,

        clearSimulariumFile,

    }: ConversionProps): JSX.Element => {

        const [fileToConvert, setFileToConvert] = useState<UploadFile | null>();

        const [isProcessing, setIsProcessing] = useState<boolean>(false);

    @@ -110,6 +114,8 @@ const ConversionForm = ({
  
        const cancelProcessing = () => {

            setIsProcessing(false);

            setConversionStatus({ status: ConversionStatus.NoServer });

            // todo - keep old trajectory and timestamp when cancelling conversion request

            clearSimulariumFile({ newFile: false });

        };

        const cancelConversion = () => {

    @@ -135,36 +141,34 @@ const ConversionForm = ({
  
            customRequest(file, receiveFileToConvert, setError);

        };

        const validateFileType = (fileName: string) => {

            const fileExtension = fileName.split(".").pop();

            if (fileExtension) {

                if (

                    validFileExtensions[conversionProcessingData.engineType] ===

        const validateFileType = () => {

            const fileExtension = fileToConvert?.name.split(".").pop();

            if (

                fileExtension &&

                validFileExtensions[conversionProcessingData.engineType] ===

                    fileExtension.toLowerCase()

                ) {

                    return true;

                }

            ) {

                return true;

            } else {

                setConversionError(ConversionError.FILE_TYPE_ERROR);

                return false;

            }

            setConversionError(ConversionError.FILE_TYPE_ERROR);

            return false;

        };

        const sendFileToConvert = () => {

            if (

                engineSelected &&

                fileToConvert &&

                validateFileType(fileToConvert.name)

            ) {

                if (conversionStatus === ConversionStatus.NoServer) {

                    setConversionError(ConversionError.SERVER_ERROR);

                } else {

                    // we now use this local state lets us distinguish between arriving on this page normally

                    // and arriving here because the server went down while a conversion was in process

                    setIsProcessing(true);

                    setConversionStatus({ status: ConversionStatus.Active });

                    convertFile();

                }

            if (conversionStatus === ConversionStatus.NoServer) {

                setConversionError(ConversionError.SERVER_ERROR);

                return;

            }

            if (!validateFileType()) {

                return;

            }

            // we now use this local state lets us distinguish between arriving on this page normally

            // and arriving here because the server went down while a conversion was in process

            setIsProcessing(true);

            setConversionStatus({ status: ConversionStatus.Active });

            const fileId = `${uuidv4()}.simularium`;

            convertFile(fileId);

        };

        const renderUploadFile = (): JSX.Element => {

    @@ -173,7 +177,6 @@ const ConversionForm = ({
  
        };

        // TODO: use conversion template data to render the form

        console.log("conversion form data", conversionProcessingData);

        const conversionForm = (

            <div className={classNames(styles.container, theme.lightTheme)}>

                {conversionStatus === ConversionStatus.Active && (

    @@ -273,6 +276,7 @@ const dispatchToPropsMap = {
  
        initializeConversion: trajectoryStateBranch.actions.initializeConversion,

        convertFile: trajectoryStateBranch.actions.convertFile,

        setConversionStatus: trajectoryStateBranch.actions.setConversionStatus,

        clearSimulariumFile: trajectoryStateBranch.actions.clearSimulariumFile,

    };

    export default connect(mapStateToProps, dispatchToPropsMap)(ConversionForm);

src/containers/ViewerPanel/index.tsx

-Original file line number
+Diff line change
@@ Expand Up / @@ -48,6 +48,7 @@ import { TUTORIAL_PATHNAME } from "../../routes"; @@
     import ErrorNotification from "../../components/ErrorNotification";
     import { MOBILE_CUTOFF } from "../../constants";
     import { hasUrlParamsSettings } from "../../util";
+    import { ConversionProcessingData } from "../../state/trajectory/conversion-data-types";
     import {
         convertUIDataToSelectionData,
@@ Expand Down Expand Up / @@ -95,6 +96,8 @@ interface ViewerPanelProps { @@
         movieTitle: string;
         conversionStatus: ConversionStatus;
         setConversionStatus: ActionCreator<SetConversionStatusAction>;
+        receiveConvertedFile: ActionCreator<ReceiveAction>;
+        conversionProcessingData: ConversionProcessingData;
     }
     interface ViewerPanelState {
@@ Expand Down Expand Up @@
             setIsLooping(!isLooping);
         }
+        public handleIncomingConvertedFile(data: TrajectoryFileInfo) {
+            const { receiveConvertedFile, conversionProcessingData } = this.props;
+            const { fileId } = conversionProcessingData;
+            const title = data.trajectoryTitle || fileId;
+            receiveConvertedFile({
+                name: fileId,
+                title: title,
+            });
+        }
         public onTrajectoryFileInfoChanged(data: TrajectoryFileInfo) {
-            const { conversionStatus, setConversionStatus } = this.props;
-            if (conversionStatus !== ConversionStatus.Inactive) {
-                setConversionStatus({ status: ConversionStatus.Inactive });
+            const { receiveTrajectory, simulariumController, conversionStatus } =
+                this.props;
+            if (conversionStatus === ConversionStatus.Active) {
+                this.handleIncomingConvertedFile(data);
             }
-            const { receiveTrajectory, simulariumController } = this.props;
             const tickIntervalLength = simulariumController.tickIntervalLength;
             let scaleBarLabelNumber =
@@ Expand Down Expand Up / @@ -517,6 +529,8 @@ function mapStateToProps(state: State) { @@
             movieTitle: getMovieTitle(state),
             conversionStatus:
                 trajectoryStateBranch.selectors.getConversionStatus(state),
+            conversionProcessingData:
+                trajectoryStateBranch.selectors.getConversionProcessingData(state),
         };
     }
@@ Expand All / @@ -534,6 +548,7 @@ const dispatchToPropsMap = { @@
         setIsPlaying: viewerStateBranch.actions.setIsPlaying,
         setIsLooping: viewerStateBranch.actions.setIsLooping,
         setError: viewerStateBranch.actions.setError,
+        receiveConvertedFile: trajectoryStateBranch.actions.receiveConvertedFile,
         setConversionStatus: trajectoryStateBranch.actions.setConversionStatus,
         setUrlParams: trajectoryStateBranch.actions.setUrlParams,
     };
@@ Expand Down @@

src/state/configure-store.ts

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -4,7 +4,7 @@ import { createLogicMiddleware } from "redux-logic";
  
    import {

        BASE_API_URL,

        DATA_BUCKET_URL,

        DOWNLOAD_URL,

        UI_TEMPLATE_DOWNLOAD_URL_ROOT,

        UI_TEMPLATE_URL_ROOT,

        URL_PARAM_BASE_TYPES,

    @@ -37,7 +37,7 @@ const logics = [
  
    const reduxLogicDependencies = {

        baseApiUrl: BASE_API_URL,

        plotDataUrl: DATA_BUCKET_URL,

        plotDataUrl: DOWNLOAD_URL,

        httpClient: axios,

        uiTemplateUrlRoot: UI_TEMPLATE_URL_ROOT,

        uiTemplateDownloadUrlRoot: UI_TEMPLATE_DOWNLOAD_URL_ROOT,

src/state/trajectory/actions.ts

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -17,6 +17,7 @@ import {
  
        RECEIVE_FILE_TO_CONVERT,

        SET_CONVERSION_STATUS,

        CONVERT_FILE,

        RECEIVE_CONVERTED_FILE,

    } from "./constants";

    import { AvailableEngines } from "./conversion-data-types";

    import {

    @@ -174,8 +175,16 @@ export function setConversionEngine(
  
        };

    }

    export function convertFile(): ConvertFileAction {

    export function convertFile(payload: { fileId: string }): ConvertFileAction {

        return {

            payload,

            type: CONVERT_FILE,

        };

    }

    export function receiveConvertedFile(payload: NetworkedSimFile): ReceiveAction {

        return {

            payload,

            type: RECEIVE_CONVERTED_FILE,

        };

    }

src/state/trajectory/constants.ts

-Original file line number
+Diff line change
@@ Expand Up @@
         "receive-file-to-convert"
     );
     export const CONVERT_FILE = makeTrajectoryConstant("convert-file");
+    export const RECEIVE_CONVERTED_FILE =
+        makeTrajectoryConstant("receive-converted");
     export const SET_CONVERSION_STATUS = makeTrajectoryConstant("set-status");

src/state/trajectory/conversion-data-types.ts

-Original file line number
+Diff line change
@@ Expand Up / @@ -49,4 +49,5 @@ export type ConversionProcessingData = { @@
         fileToConvert: string;
         fileName: string;
         engineType: AvailableEngines;
+        fileId: string;
     };

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