[python] Update pyarrow dependency (#1925)

* [python] Update pyarrow dependency * Use pyarrow_hotfix * lint * round n+1 of code review * more hyperlinks
single-cell-data · Dec 1, 2023 · 2eb024e · 2eb024e
1 parent 69e0f30
commit 2eb024e
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diff --git a/apis/python/setup.py b/apis/python/setup.py
@@ -280,7 +280,12 @@ def run(self):
         "numba==0.56.4; python_version<'3.8'",
         "numpy>=1.18,<1.24; python_version<'3.8'",
         "pandas",
-        "pyarrow>=9.0.0,<13.0.0",  # MacOS issue with import pyarrow before import tiledb at >= 13.0
+        # TODO: once we no longer support Python 3.7, remove this and pin to pyarrow >= 14.0.1
+        # https://github.com/single-cell-data/TileDB-SOMA/issues/1926
+        "pyarrow_hotfix",
+        # MacOS issue with import pyarrow before import tiledb at >= 13.0:
+        # https://github.com/single-cell-data/TileDB-SOMA/issues/1926#issuecomment-1834695149
+        "pyarrow>=9.0.0,<13.0.0",
         "scanpy>=1.9.2",
         "scipy",
         "somacore==1.0.4",

diff --git a/apis/python/src/tiledbsoma/__init__.py b/apis/python/src/tiledbsoma/__init__.py
@@ -96,6 +96,11 @@
 from somacore import AxisColumnNames, AxisQuery, ExperimentAxisQuery
 from somacore.options import ResultOrder
 
+# TODO: once we no longer support Python 3.7, remove this and pin to pyarrow >= 14.0.1
+# https://github.com/single-cell-data/TileDB-SOMA/issues/1926
+# ruff: noqa
+import pyarrow_hotfix
+
 from ._collection import Collection
 from ._constants import SOMA_JOINID
 from ._dataframe import DataFrame