more [skip ci]

apis/python/remote_tests/test_03_versions.py

@@ -110,3 +110,26 @@ def test_experiment_queries(conftest_context, uri_and_info):
         )
 
         assert (query.n_obs, query.n_vars) == (530, 4)
+
+
+@pytest.mark.parametrize(
+    "uri_and_info",
+    util_pbmc3k_unprocessed_versions(),
+)
+def test_resize_information(conftest_context, uri_and_info):
+    uri, info = uri_and_info
+    print()
+    print("URI")
+    print(uri)
+
+    upgradeable = tiledbsoma.io.upgrade_experiment_shapes(
+        uri, check_only=True, context=conftest_context
+    )
+    if info["shape"] == "old":
+        assert upgradeable
+    else:
+        assert not upgradeable
+
+    # tiledbsoma.io.show_experiment_shapes
+    # tiledbsoma.io.upgrade_experiment_shapes
+    # tiledbsoma.io.resize_experiment

apis/python/remote_tests/test_04_append.py

@@ -3,10 +3,10 @@
 import os
 
 import pytest
+import scanpy as sc
 
 import tiledbsoma
 import tiledbsoma.io
-import scanpy as sc
 
 from .util import util_make_uri
 
@@ -27,16 +27,16 @@ def test_basic_append(conftest_context, conftest_namespace, conftest_default_s3_
     measurement_name = "RNA"
 
     adata1 = sc.datasets.pbmc3k()
-    adata1 .obs["when"] = ["Monday"] * len(adata1 .obs)
-    tiledbsoma.io.from_anndata(creation_uri, adata1 , measurement_name=measurement_name)
+    adata1.obs["when"] = ["Monday"] * len(adata1.obs)
+    tiledbsoma.io.from_anndata(creation_uri, adata1, measurement_name=measurement_name)
 
     with tiledbsoma.Experiment.open(readback_uri) as exp:
         assert exp.obs.count == 2700
         assert exp.ms["RNA"].var.count == 32738
         assert exp.ms["RNA"].X["data"].shape == (2700, 32738)
 
     adata2 = sc.datasets.pbmc3k()
-    adata2.obs.index = [e.replace("-1", "-2") for e in adata1 .obs.index]
+    adata2.obs.index = [e.replace("-1", "-2") for e in adata1.obs.index]
     adata2.obs["when"] = ["Tuesday"] * len(adata2.obs)
     adata2.X *= 10
 

apis/python/remote_tests/test_99_todo.py

@@ -56,6 +56,4 @@
 # dag.wait()
 # dag.node("output").result()
 
-# * Make small stack; provenance
-# * Append mode: Monday/Tuesday is fine
 # * Show, upgrade, resize