Code

UMAPs without mitochondria#1

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sjspielman wants to merge 3 commits intoinitiate-tumor-purity-modulesjspielman/OpenPBTA-analysis:initiate-tumor-purity-modulefrom umap-sans-mitosjspielman/OpenPBTA-analysis:umap-sans-mitoCopy head branch name to clipboard

+6,498-1

Commits

Commits on Jan 10, 2023

• Add option to remove mitochondrial genes from dimension reduction and generate associated files for the new 'rsem_stranded_no-mito_log' filename_lead value

  sjspielman

  committed
  f91caff

• Accidentally had used polya and found other bug. Fixed code and regenerated stranded rsem without mito umap

  sjspielman

  committed
  a9fca41

Commits on Jan 11, 2023

• notebook to plot UMAP without mito as well as mito fpkm jitter

  sjspielman

  committed
  a27c285