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Refactor subchat tool handling to use Option<Vec<String>>
- Update tool subset handling in subchat functions to use `Option<Vec<String>>`. - Change vector initializations from `vec![]` to `Some(vec![])` where applicable. - Modify database schema to include new fields `cthread_max_new_tokens` and `cthread_n` with default values. - Use `PathBuf` for database path configuration in `_make_connection`. - Initialize `config_dir` with a clone to ensure proper usage context. - Enhance database thread structure with default implementations for new fields. - Simplify subchat interaction in `autonomy.rs`, removing unused logic.
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