Merge pull request #16 from smart-on-fhir/mikix/cleanup

chore: delete study-specific folders, they shouldn't live in main
smart-on-fhir · Jan 12, 2024 · f21086e · f21086e
2 parents 0ca087c + 9adeba4
commit f21086e
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Showing 11 changed files with 2 additions and 295 deletions.
diff --git a/chart_review/cohort.py b/chart_review/cohort.py
@@ -1,5 +1,4 @@
 import os
-import sys
 from typing import Iterable, Optional
 
 from chart_review.common import guard_str, guard_iter, guard_in

diff --git a/chart_review/common.py b/chart_review/common.py
@@ -2,9 +2,6 @@
 from enum import Enum, EnumMeta
 from typing import Optional
 from collections.abc import Iterable
-import warnings
-import functools
-import datetime
 import logging
 import json
 

diff --git a/chart_review/covid_symptom/__init__.py b/chart_review/covid_symptom/__init__.py
diff --git a/chart_review/covid_symptom/config.py b/chart_review/covid_symptom/config.py
diff --git a/chart_review/covid_symptom/config.yaml b/chart_review/covid_symptom/config.yaml
diff --git a/chart_review/covid_symptom/paper.py b/chart_review/covid_symptom/paper.py
diff --git a/chart_review/external.py b/chart_review/external.py
@@ -112,8 +112,8 @@ def merge_external(
     for row in exported_json:
         if "docref_mappings" not in row.get("data", {}):
             sys.exit(
-                f"Your Label Studio export does not include DocRef/Encounter ID mapping metadata!\n"
-                f"Consider re-uploading your notes using Cumulus ETL's chart-review command."
+                "Your Label Studio export does not include DocRef/Encounter ID mapping metadata!\n"
+                "Consider re-uploading your notes using Cumulus ETL's chart-review command."
             )
         break  # just inspect one
 

diff --git a/chart_review/suicide_icd10/__init__.py b/chart_review/suicide_icd10/__init__.py
diff --git a/chart_review/suicide_icd10/config.py b/chart_review/suicide_icd10/config.py
diff --git a/chart_review/suicide_icd10/config.yaml b/chart_review/suicide_icd10/config.yaml
diff --git a/tests/test_agree.py b/tests/test_agree.py
@@ -1,7 +1,5 @@
 """Tests for agree.py"""
 
-import os
-import tempfile
 import unittest
 
 import ddt