Process new ETL gpt tables into symptom lists #135
Workflow file for this run
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name: CI | |
on: [push] | |
jobs: | |
unittest: | |
name: unit tests | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install .[tests] | |
- name: Test with pytest | |
run: python -m pytest | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Get library from main | |
run: pip install git+https://github.com/smart-on-fhir/cumulus-library.git | |
- name: Install linters | |
run: | | |
python -m pip install --upgrade pip | |
pip install ".[dev]" | |
- name: Run sqlfluff on jinja templates | |
run: | | |
sqlfluff lint | |
- name: Run ruff | |
if: success() || failure() # still run ruff if above checks fails | |
run: | | |
ruff check | |
ruff format --check |