shotmap has been added. (BioContainers#215)

* base.image replaced by base_image * change diffexpIR * add shotmap
sminot · Mar 29, 2018 · d11737e · d11737e
1 parent 03530e4
commit d11737e
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Showing 95 changed files with 201 additions and 93 deletions.
diff --git a/DiffExpIR/0.0.1/Dockerfile b/DiffExpIR/0.0.1/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/bamtools:latest
 
 ################## METADATA ######################
-LABEL base.image="bamtools:latest"
+LABEL base_image="bamtools:latest"
 LABEL version="3"
 LABEL software="DiffExpIR"
 LABEL software.version="0.0.1"

diff --git a/Rstudio-Proteomics/1.0.0/Dockerfile b/Rstudio-Proteomics/1.0.0/Dockerfile
@@ -5,7 +5,7 @@ FROM bioconductor/release_core
 
 ################## METADATA ######################
 
-LABEL base.image="bioconductor/release_core"
+LABEL base_image="bioconductor/release_core"
 LABEL version="1"
 LABEL software="RProteomics"
 LABEL software.version="1"

diff --git a/abyss/1.9.0/Dockerfile b/abyss/1.9.0/Dockerfile
@@ -3,7 +3,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="abyss"
 LABEL software.version="1.9.0"

diff --git a/aliscore/2.0/Dockerfile b/aliscore/2.0/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="Aliscore"
 LABEL software.version="v.2.0"

diff --git a/bamtools/2.4.0/Dockerfile b/bamtools/2.4.0/Dockerfile
@@ -3,7 +3,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="bamtools"
 LABEL software.version="2.4.0"

diff --git a/bcftools/1.5/Dockerfile b/bcftools/1.5/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="bcftools"
 LABEL software.version="1.5"

diff --git a/bedtools/2.25.0/Dockerfile b/bedtools/2.25.0/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="bedtools"
 LABEL software.version="2.25.0"

diff --git a/biocontainers/1.0.0/Dockerfile b/biocontainers/1.0.0/Dockerfile
@@ -2,7 +2,8 @@
 FROM ubuntu:16.04
 
 ################## METADATA ######################
-LABEL base.image="ubuntu:16.04"
+
+LABEL base_image="ubuntu:16.04"
 LABEL version="4"
 LABEL software="Biocontainers base Image"
 LABEL software.version="1.0.0"

diff --git a/blast/2.2.31/Dockerfile b/blast/2.2.31/Dockerfile
@@ -3,7 +3,8 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="NCBI BLAST+"
 LABEL software.version="2.2.31"

diff --git a/bowtie/1.1.2/Dockerfile b/bowtie/1.1.2/Dockerfile
@@ -3,7 +3,8 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="bowtie"
 LABEL software.version="1.1.2"

diff --git a/bowtie2/2.2.8/Dockerfile b/bowtie2/2.2.8/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="bowtie2"
 LABEL software.version="2.2.8"

diff --git a/bowtie2/2.2.9/Dockerfile b/bowtie2/2.2.9/Dockerfile
@@ -3,7 +3,8 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="bowtie2"
 LABEL software.version="2.2.9"

diff --git a/bwa/0.7.12/Dockerfile b/bwa/0.7.12/Dockerfile
@@ -2,7 +2,8 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="bwa"
 LABEL software.version="0.7.12"

diff --git a/bwa/0.7.13/Dockerfile b/bwa/0.7.13/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="bwa"
 LABEL software.version="0.7.13"

diff --git a/bwa/0.7.15/Dockerfile b/bwa/0.7.15/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="bwa"
 LABEL software.version="0.7.15"

diff --git a/cava/1.1.1/Dockerfile b/cava/1.1.1/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="cava"
 LABEL software.version="1.1.1"

diff --git a/clustal-omega/1.2.1-1/Dockerfile b/clustal-omega/1.2.1-1/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="clustal-omega"
 LABEL software.version="1.2.1-1"

diff --git a/comet/2015011/Dockerfile b/comet/2015011/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="Comet"
 LABEL software.version="2015011"

diff --git a/comet/2015012/Dockerfile b/comet/2015012/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="Comet"
 LABEL software.version="2015012"

diff --git a/comet/2015020/Dockerfile b/comet/2015020/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="Comet"
 LABEL software.version="2015020"

diff --git a/comet/2015025/Dockerfile b/comet/2015025/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="Comet"
 LABEL software.version="2015025"

diff --git a/comet/2016010/Dockerfile b/comet/2016010/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="Comet"
 LABEL software.version="2016010"

diff --git a/comet/2016011/Dockerfile b/comet/2016011/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="Comet"
 LABEL software.version="2016011"

diff --git a/comet/2016012/Dockerfile b/comet/2016012/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="Comet"
 LABEL software.version="2016012"

diff --git a/crux/2.1/Dockerfile b/crux/2.1/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="crux"
 LABEL software.version="2.1"

diff --git a/denovogui/1.10.4/Dockerfile b/denovogui/1.10.4/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="denovogui"
 LABEL software.version="1.10.4"

diff --git a/denovogui/1.5.2/Dockerfile b/denovogui/1.5.2/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="2"
 LABEL software="denovogui"
 LABEL software.version="1.5.2"

diff --git a/dia-umpire/1.4256/Dockerfile b/dia-umpire/1.4256/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="DIA-Umpire"
 LABEL software.version="1.4256"

diff --git a/dia-umpire/2.1.2/Dockerfile b/dia-umpire/2.1.2/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="DIA-Umpire"
 LABEL software.version="2.1.2"

diff --git a/discovar/52488/Dockerfile b/discovar/52488/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="discovar"
 LABEL software.version="52488"

diff --git a/discovardenovo/52488/Dockerfile b/discovardenovo/52488/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="discovardenovo"
 LABEL software.version="52488"

diff --git a/emboss/6.5.7/Dockerfile b/emboss/6.5.7/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="emboss"
 LABEL software.version="6.5.7"

diff --git a/entrez-direct/7.50.20171103/Dockerfile b/entrez-direct/7.50.20171103/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="entrez-direct"
 LABEL software.version="7.50.20171103"

diff --git a/fastqc/0.11.5/Dockerfile b/fastqc/0.11.5/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="FASTQC"
 LABEL software.version="0.11.5"

diff --git a/fastxtools/0.0.14/Dockerfile b/fastxtools/0.0.14/Dockerfile
@@ -2,7 +2,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="FASTX-Toolkit"
 LABEL software.version="0.0.14"

diff --git a/frc_align/20150723/Dockerfile b/frc_align/20150723/Dockerfile
@@ -3,7 +3,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="frc_align"
 LABEL software.version="20150723"

diff --git a/gapcloser/1.12-r6/Dockerfile b/gapcloser/1.12-r6/Dockerfile
@@ -3,7 +3,7 @@
 FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="gapcloser"
 LABEL software.version="1.12-r6"

diff --git a/gatk/3.4/Dockerfile b/gatk/3.4/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest
 
 ###################################### METADATA ##############################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="gatk"
 LABEL software.version="3.4"

diff --git a/gcta/1.24.7/Dockerfile b/gcta/1.24.7/Dockerfile
@@ -3,7 +3,7 @@ FROM biocontainers/biocontainers:latest
 
 ######################## METADATA ###########################################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="gcta"
 LABEL software.version="1.24.7"

diff --git a/htslib/1.2.1/Dockerfile b/htslib/1.2.1/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest
 
 ################################# METADATA ###################################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="htslib"
 LABEL software.version="1.2.1"

diff --git a/jbrowse/1.11.6/Dockerfile b/jbrowse/1.11.6/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest
 
 ################################### Metadata ################################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="1"
 LABEL software="jbrowse"
 LABEL software.version="1.11.6"

diff --git a/jellyfish/2.2.3/Dockerfile b/jellyfish/2.2.3/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:latest
 
 ############################# METADATA ######################################
 
-LABEL base.image="biocontainers:latest"Version:          1
+LABEL base_image="biocontainers:latest"Version:          1
 LABEL software="jellyfish"
 LABEL software.version="2.2.3"
 LABEL about.summary="A fast multi-threaded k-mer counter"

diff --git a/magicblast/1.3.0/Dockerfile b/magicblast/1.3.0/Dockerfile
@@ -3,7 +3,7 @@ FROM biocontainers/biocontainers:latest
 
 ################## METADATA ######################
 
-LABEL base.image="biocontainers:latest"
+LABEL base_image="biocontainers:latest"
 LABEL version="3"
 LABEL software="magicblast"
 LABEL software.version="1.3.0"