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feat: include rule name as comment #16

Merged
merged 3 commits into from
Jan 10, 2024
Merged

feat: include rule name as comment #16

merged 3 commits into from
Jan 10, 2024

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fgvieira
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@fgvieira fgvieira commented Jan 10, 2024 •
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Since the jobs are named with a unique ID, it is not easy to figure out what rule is being run on a specific SLURM job.
This PR adds the rule name as a comment, so that it can be displayed by squeue and sacct.

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The idea behind slurm_extra is to allow using additional features from sbatch and not to code all explicitly in the executor.

Regarding the jobnames, please see the discussion in #12 and the issue I just opened: #17. If you want to: go ahead on #17 (I will not find the time this week). Yet, adding the comment and other features might be better handled with slurm_extra, don't you think? Otherwise, we possibly end up with a huge number of flags to be supported on both ends and whenever SchedMD decides on a different CLI our code breaks.

@cmeesters cmeesters mentioned this pull request Jan 10, 2024
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How can I specify a rule-specific comment through slum_extra? Do you think something like --default-resources slurm_extra="--comment {job.name}" work? Or I'd have to specify a slurm_extra on each rule?

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You cannot, and as pointed out in #17 I concede.

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cmeesters approved these changes Jan 10, 2024
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good idea

@cmeesters cmeesters merged commit 2e39b18 into snakemake:main Jan 10, 2024
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@github-actions github-actions bot mentioned this pull request Jan 10, 2024
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@fgvieira fgvieira deleted the rulename_as_comment branch January 11, 2024 08:25
cmeesters pushed a commit that referenced this pull request Jan 12, 2024
@github-actions
chore(main): release 0.2.0 (#19)
5501144 
🤖 I have created a release *beep* *boop*
---


##
[0.2.0](v0.1.5...v0.2.0)
(2024-01-10)


### Features

* include rule name as comment
([#16](#16))
([2e39b18](2e39b18))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@cmeesters cmeesters mentioned this pull request Jan 12, 2024
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@tdido tdido mentioned this pull request Apr 2, 2024
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@cmeesters cmeesters cmeesters approved these changes

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@fgvieira @cmeesters