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fix!: remove latency wait support as this should rather be handled in main Snakemake (as it is already done). The reason is that the plugin cannot distinguish between cases where latency has to be taken into accound and where not, leading to overall much slower processing when latency wait is applied regardless of the context. This introduces a breaking change because this plugin now does not offer any settings anymore. #36

fix!: remove latency wait support as this should rather be handled in main Snakemake (as it is already done). The reason is that the plugin cannot distinguish between cases where latency has to be taken into accound and where not, leading to overall much slower processing when latency wait is applied regardless of the context. This introduces a breaking change because this plugin now does not offer any settings anymore.

fix!: remove latency wait support as this should rather be handled in main Snakemake (as it is already done). The reason is that the plugin cannot distinguish between cases where latency has to be taken into accound and where not, leading to overall much slower processing when latency wait is applied regardless of the context. This introduces a breaking change because this plugin now does not offer any settings anymore. #36

Workflow file for this run

name: CI
on:
push:
branches:
- main
pull_request:
jobs:
formatting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: "3.11"
- name: Install poetry
run: pip install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.11"
cache: poetry
- name: Install dependencies
run: poetry install
- name: Check formatting
run: poetry run black --check .
linting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: "3.11"
- name: Install poetry
run: pip install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.11"
cache: poetry
- name: Install Dependencies using Poetry
run: poetry install
- name: Check code
run: poetry run flake8
testing:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: "3.11"
- name: Install poetry
run: pip install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.11"
cache: poetry
- name: Install dependencies
run: poetry install
- name: Run pytest
run: poetry run coverage run -m pytest tests/tests.py
- name: Run Coverage
run: poetry run coverage report -m