fix!: remove latency wait support as this should rather be handled in main Snakemake (as it is already done). The reason is that the plugin cannot distinguish between cases where latency has to be taken into accound and where not, leading to overall much slower processing when latency wait is applied regardless of the context. This introduces a breaking change because this plugin now does not offer any settings anymore. #36
Workflow file for this run
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name: CI | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
jobs: | |
formatting: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out the code | |
uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- name: Install poetry | |
run: pip install poetry | |
- name: Determine dependencies | |
run: poetry lock | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
cache: poetry | |
- name: Install dependencies | |
run: poetry install | |
- name: Check formatting | |
run: poetry run black --check . | |
linting: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out the code | |
uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- name: Install poetry | |
run: pip install poetry | |
- name: Determine dependencies | |
run: poetry lock | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
cache: poetry | |
- name: Install Dependencies using Poetry | |
run: poetry install | |
- name: Check code | |
run: poetry run flake8 | |
testing: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- name: Install poetry | |
run: pip install poetry | |
- name: Determine dependencies | |
run: poetry lock | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
cache: poetry | |
- name: Install dependencies | |
run: poetry install | |
- name: Run pytest | |
run: poetry run coverage run -m pytest tests/tests.py | |
- name: Run Coverage | |
run: poetry run coverage report -m |