docs: explain how to mask envvars #27
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📝 WalkthroughWalkthroughThe documentation for Snakemake CLI flags has been updated to provide clearer guidance on the use of local storage prefixes for remote jobs. Specifically, the example for the Changes
Sequence Diagram(s)sequenceDiagram
participant User
participant Snakemake
participant RemoteJob
User->>Snakemake: Start Snakemake with CLI flags
Snakemake->>RemoteJob: Passes remote-job-local-storage-prefix
RemoteJob->>RemoteJob: Expands \$JOBID in remote context
RemoteJob-->>Snakemake: Executes job with local storage prefix
Snakemake-->>User: Job execution complete
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🧹 Outside diff range and nitpick comments (1)
docs/further.md (1)
34-34: Fix grammar in the explanationThe explanation is valuable, but there's a grammatical error in the sentence.
-Here, in case a used variable can only expanded within the remote job, make sure to mask the expansion upon starting Snakemake by preceeding the variable declaration with a backslash (\$JOBID). +Here, in case a used variable can only be expanded within the remote job, make sure to mask the expansion upon starting Snakemake by preceeding the variable declaration with a backslash (\$JOBID).🧰 Tools
🪛 LanguageTool
[grammar] ~34-~34: Did you mean “be expanded”?
Context: ... Here, in case a used variable can only expanded within the remote job, make sure to mas...(WILL_BASED_ON)
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docs/further.md(1 hunks)
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🪛 LanguageTool
docs/further.md
[grammar] ~34-~34: Did you mean “be expanded”?
Context: ... Here, in case a used variable can only expanded within the remote job, make sure to mas...
(WILL_BASED_ON)
🔇 Additional comments (2)
docs/further.md (2)
26-26: LGTM! Clear example of variable escaping
The example correctly demonstrates how to escape the $JOBID variable in the configuration, which is consistent with the documentation's purpose.
26-35: Well-structured documentation enhancement
The combination of the practical example and the explanatory note effectively communicates how to handle environment variables in remote jobs. The changes are well-integrated with the existing documentation and provide clear guidance to users.
🧰 Tools
🪛 LanguageTool
[grammar] ~34-~34: Did you mean “be expanded”?
Context: ... Here, in case a used variable can only expanded within the remote job, make sure to mas...
(WILL_BASED_ON)
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Closing in favor of snakemake/snakemake#3222 |
fixes #22
Summary by CodeRabbit
$JOBIDvariable.