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1,083 Open 718 Closed
1,083 Open 718 Closed
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Issues list

Snakemake different performances in SLURM
#3302 opened Feb 18, 2025 by mbreyt
Report html pages generated in checkpoint jobs are not included in the report. bug Something isn't working
#3301 opened Feb 17, 2025 by weizhu365
snakemake cannot validate JSON schema 2020-12 bug Something isn't working
#3299 opened Feb 17, 2025 by irm-codebase
1
Unescaped quotes in generated bash shell script bug Something isn't working
#3297 opened Feb 17, 2025 by prs513rosewood
1
4
Snakemake 8.25.2/8.27 bug running scripts (possible bug from .snakemake/scripts script generation/usage) bug Something isn't working
#3292 opened Feb 14, 2025 by cachedpotato
Snakemake 7.3.7 failed to generate report due to the dead link of vega license bug Something isn't working
#3291 opened Feb 13, 2025 by weizhu365
1
Add option to just touch all output files, for debugging purposes enhancement New feature or request
#3290 opened Feb 12, 2025 by gipert
1
pulp API breaking snakemake workflow bug Something isn't working
#3289 opened Feb 11, 2025 by DamilolaDecarls
snakemake --list-params-changes raises TypeError: 'ParamsChange' object is not iterable bug Something isn't working
#3288 opened Feb 11, 2025 by prs513rosewood
Option to provide a file manifest listing source files to upload for remote exectution enhancement New feature or request
#3287 opened Feb 8, 2025 by kriemo
Community Contribution: Adding Syntax Highlighting for Snakemake in KDE Editors enhancement New feature or request
#3286 opened Feb 7, 2025 by tbigot
Are group-specific resource constraints possible?
#3284 opened Feb 6, 2025 by mir-cat
Using get() on checkpoints in input function multiple times only schedules the checkpoint once bug Something isn't working
#3283 opened Feb 3, 2025 by gabuzi
2
--forceall ignoring upstream rules with missing input files bug Something isn't working
#3280 opened Feb 2, 2025 by euronion
AttributeError when using --runtime-profile argument bug Something isn't working
#3278 opened Jan 30, 2025 by mmmaat
1
Disable source caching enhancement New feature or request
#3276 opened Jan 30, 2025 by Redmar-van-den-Berg
EnvModules and remote executors - how it could work enhancement New feature or request
#3274 opened Jan 27, 2025 by HaraldWilhelmi
2
Snakemake 8 removes output files of succesful jobs, crashes bug Something isn't working
#3272 opened Jan 27, 2025 by Redmar-van-den-Berg
5
accessing mem_mb from resources in params bug Something isn't working
#3271 opened Jan 24, 2025 by jd3234
CLI documentation contains invalid dashes bug Something isn't working
#3268 opened Jan 23, 2025 by lczech
--delete-all-output ignores --dry-run bug Something isn't working
#3264 opened Jan 22, 2025 by GaspardR
1
Workflow should not fail on clock skew bug Something isn't working
#3261 opened Jan 22, 2025 by Redmar-van-den-Berg
1
Conda not found in containzerized container bug Something isn't working
#3257 opened Jan 20, 2025 by pdimens
1
Input files from the future enhancement New feature or request
#3254 opened Jan 14, 2025 by lgrcia
1
global conda directive error: The package snakemake-storage-plugin-http is not installed bug Something isn't working
#3252 opened Jan 13, 2025 by danpal96
ProTip! no:milestone will show everything without a milestone.