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Issues list

Sequence identity differs with and w.o. -a in mmseqs search
#958 opened Feb 19, 2025 by dst111dst
How to update a cluster db to reflect the new sequence database?
#956 opened Feb 18, 2025 by jianye00
Ambiguous Warning Message for createdb-mode and shuffle in easy-cluster
#955 opened Feb 18, 2025 by heispv
mmseqs don't use enough CPU
#954 opened Feb 18, 2025 by shihai-gong
easy-search SAM alignment extends off the end of the reference
#952 opened Feb 17, 2025 by schorlton-bugseq
mmseqs clusterupdate workflow drops sequences that are still in new sequence set
#950 opened Feb 15, 2025 by jianye00
1
MMseqs2 result2msa step fails due to incorrect database type
#949 opened Feb 7, 2025 by real-junjiezhang
1
Why mmseq2 is much slower than blastn?
#948 opened Feb 7, 2025 by 544728460
10
SAM output format @SQ headers
#947 opened Jan 31, 2025 by schorlton-bugseq
2
Error in expand aln
#946 opened Jan 27, 2025 by abhinavb22
Run MMSeqs/FoldSeek with sequences that do not use amino acid sequences
#945 opened Jan 24, 2025 by danny305
4
Can I run mmseqs easy-cluster with gapped sequences?
#943 opened Jan 24, 2025 by JinyuanSun
1
createindex of target database bug
#942 opened Jan 24, 2025 by NotoriousTom
1
libmarv initialization error during GPU-accelerated search against ColabFold databases using Docker
#941 opened Jan 23, 2025 by brianloyal
12
mmseqs prefilter: performance issues on Mac ARM
#939 opened Jan 21, 2025 by jackroddy
msa2profile gets "killed" when processing eggNOGDB
#937 opened Jan 20, 2025 by eggrandio
Unable to download dbCAN2 database
#936 opened Jan 19, 2025 by mohitsharma-123
Help to troubleshoot a clustering-profile-search workflow
#935 opened Jan 18, 2025 by sivico26
1
Create Mmseqs MSA with species header against Uniprot similar to Jackhmmer output
#934 opened Jan 17, 2025 by abhinavb22
taxonomy module of mmseqs2 v16 accepts only --search-type 3
#932 opened Jan 17, 2025 by jasmezz
4
Unable to map all short peptides (7–30 aa) to reference proteome
#929 opened Jan 15, 2025 by PominovaMS
Mmseq does not cluster: Segmentation fault (core dumped)
#928 opened Jan 15, 2025 by loopersosa
linclust.sh: line 76: Segmentation fault
#927 opened Jan 15, 2025 by sinamajidian
3
Default threads number value should use sched_getaffinity
#925 opened Jan 6, 2025 by jbd
1
3
Exclude multiple taxonomy from a database
#924 opened Jan 3, 2025 by Xillanne
1
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