Fix invalid entries accessed in FindPam

soedinglab · May 15, 2020 · c6c1c48 · c6c1c48
1 parent 2361e17
commit c6c1c48
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/util/FindPam.cpp b/src/util/FindPam.cpp
@@ -145,8 +145,8 @@ int findpam(int argc, const char **argv, const Command& command) {
                 std::vector<std::string> columns = Util::split(line, "\t");
                 size_t tsetid = Util::fast_atoi<size_t>(columns[0].c_str());
                 // should we not call getId first? is this not a key?
-                size_t contigid = Util::fast_atoi<size_t>(setReader.getData(tsetid, thread_idx));
-                char *data = targetReader.getData(contigid, thread_idx);
+                size_t contigid = Util::fast_atoi<size_t>(setReader.getDataByDBKey(tsetid, thread_idx));
+                char *data = targetReader.getDataByDBKey(contigid, thread_idx);
                 size_t qstart = Util::fast_atoi<size_t>(columns[5].c_str()) - 1;
                 size_t qend = Util::fast_atoi<size_t>(columns[6].c_str()) - 1;
                 size_t qlen = Util::fast_atoi<size_t>(columns[7].c_str());