Show analyses on dataset details page

js/source/entries/mixedmodels.js

@@ -11,7 +11,7 @@ export function init(main_div) {
 
     var dataset_id;
 
-    alert("WELCOME TO MIXED MODELS!");
+    // alert("WELCOME TO MIXED MODELS!");
     get_select_box("datasets", "mixed_model_dataset_select", { "checkbox_name": "mixed_model_dataset_select_checkbox" });
 
     jQuery('#mixed_model_analysis_prepare_button').removeClass('active').addClass('inactive');

lib/CXGN/Dataset.pm

@@ -54,6 +54,7 @@ use Moose;
 use Moose::Util::TypeConstraints;
 use Data::Dumper;
 use JSON::Any;
+use JSON::XS;
 use CXGN::BreederSearch;
 use CXGN::People::Schema;
 use CXGN::Phenotypes::PhenotypeMatrix;
@@ -448,7 +449,7 @@ sub set_dataset_public {
         if ($@) {
             return "An error occurred, $@";
         } else {
-            return undef;
+            return;
         }
     }
 }
@@ -474,7 +475,7 @@ sub set_dataset_private {
         if ($@) {
             return "An error occurred, $@";
         } else {
-            return undef;
+            return;
         }
     }
 }
@@ -1258,7 +1259,7 @@ sub delete {
 	if ($@) {
 	    return "An error occurred, $@";
         } else {
-	    return undef;
+	    return;
 	}
 
     }
@@ -1280,11 +1281,45 @@ sub update_description {
         if ($@) {
             return "An error occurred, $@";
         } else {
-            return undef;
+            return;
         }
     }
 }
 
+=head2 get_child_analyses()
+
+# Retrieves the list of analyses that use this dataset. 
+
+=cut
+
+sub get_child_analyses {
+    my $self = shift;
+    my $dataset_id = $self->sp_dataset_id();
+
+    my $dbh = $self->schema->storage->dbh();
+
+    my $analysis_info_type_id = SGN::Model::Cvterm->get_cvterm_row($self->schema, 'analysis_metadata_json', 'project_property')->cvterm_id();
+
+    my $analysis_q = "select DISTINCT project.name, project.project_id FROM nd_experiment_project 
+    JOIN project USING (project_id) 
+    JOIN nd_experiment ON nd_experiment.nd_experiment_id=nd_experiment_project.nd_experiment_id
+    JOIN projectprop AS analysisinfo ON (project.project_id=analysisinfo.project_id)
+    JOIN cvterm ON cvterm.cvterm_id=nd_experiment.type_id 
+    WHERE cvterm.name='analysis_experiment' 
+        AND analysisinfo.type_id=$analysis_info_type_id 
+        AND analysisinfo.value::json->>'dataset_id'=?;";
+    my $h = $dbh->prepare($analysis_q);
+    $h->execute($dataset_id);
+
+    my @html = ();
+
+    while (my ($analysis_name, $analysis_id) = $h->fetchrow_array()){
+        push @html, "<a href=/analyses/".$analysis_id.">".$analysis_name."</a>";
+    }
+
+    return join(" | ", @html);
+}
+
 
 
 1;

lib/SGN/Controller/AJAX/Dataset.pm

@@ -356,6 +356,38 @@ sub get_dataset :Path('/ajax/dataset/get') Args(1) {
     $c->stash->{rest} = { dataset => $dataset_data };
 }
 
+sub get_child_analyses :Path('/ajax/dataset/get_child_analyses') Args(1) {
+    my $self = shift;
+    my $c = shift;
+    my $dataset_id = shift;
+
+    my $sp_person_id = $c->user() ? $c->user->get_object()->get_sp_person_id() : undef;
+
+    my $dataset = CXGN::Dataset->new(
+	{
+	    schema => $c->dbic_schema("Bio::Chado::Schema", undef, $sp_person_id),
+	    people_schema => $c->dbic_schema("CXGN::People::Schema", undef, $sp_person_id),
+	    sp_dataset_id=> $dataset_id,
+	});
+
+    my $analysis_list;
+    eval {
+        $analysis_list = $dataset->get_child_analyses();
+    };
+
+    if ($@){
+        $c->stash->{rest} = {error => "Error retrieving analyses using this dataset. $@"};
+    }
+
+    if ($analysis_list eq "") {
+        $analysis_list = "(none)";
+    }
+
+    print STDERR "Got the following list of accessions using this dataset: $analysis_list \n";
+
+    $c->stash->{rest} = { analysis_html_list => $analysis_list };
+}
+
 
 sub retrieve_dataset_dimension :Path('/ajax/dataset/retrieve') Args(2) {
     my $self = shift;

mason/analyses/analysis_details.mas

@@ -75,10 +75,10 @@ $analysis_metadata
                 </td>
             </tr>
 
-            <tr><td><b>Dataset ID</b></td>
+            <tr><td><b>Dataset</b></td>
                 <td>
                     <div id="analysis_dataset_id">
-%  print $analysis_metadata->dataset_id;
+%  print "<a href=/dataset/".$analysis_metadata->dataset_id.">".$analysis_metadata->dataset_id."</a>";
                     </div>
                 </td>
             </tr>
@@ -111,4 +111,4 @@ $analysis_metadata
             <& /util/barcode.mas, identifier => "$identifier_prefix"."$trial_id", trial_id=> "$trial_id", trial_name=> "$trial_name", format=>"trial_qrcode"  &>
         </div>
     </div>
-</div>
+</div>

mason/analyses/model_details.mas

@@ -73,6 +73,7 @@ jQuery(document).ready(function(){
                 jQuery('#model_name').html("<a href=\"/analyses_model/"+response.model_info.model_id+"\">"+response.model_info.model_name+"</a>");
                 jQuery('#model_description').html(response.model_info.model_description);
                 jQuery('#model_type').html(response.model_info.model_type_name);
+                jQuery('#analysis_dataset_id').html("<a href=\"/dataset/"+response.dataset.dataset_id+"\">"+response.dataset.dataset_name+"</a>");
 
                 var model_properties_string = '';
                 for (var key in response.model_info.model_properties) {

mason/dataset/index.mas

@@ -99,6 +99,7 @@ $dataset_contents => ''
                         </span>
 %                   }
                     <tr><td>Select Dataset in Wizard<td><% $wizard_link %>
+                    <tr><td>Analyses using this dataset<td id="dataset_analysis_usage"></td></td>
             </table>
         </div>
     </div>
@@ -249,6 +250,21 @@ $dataset_contents => ''
 
             window.open(url,'_blank');
         })
+
+        jQuery.ajax({
+            type: 'GET',
+            url: '/ajax/dataset/get_child_analyses/<% $dataset_id %>',
+            success: function(response) {
+                if (response.error){
+                    alert(response.error);
+                } else {
+                    jQuery('#dataset_analysis_usage').html(response.analysis_html_list);
+                }
+            },
+            error: function(response) {
+                alert("Error retrieving analyses using this dataset.");
+            }
+        });
     });
 
     </script>

t/selenium2/breeders/breeder_search.t

@@ -2,7 +2,7 @@ use strict;
 
 use lib 't/lib';
 
-use Test::More 'tests' => 110;
+use Test::More 'tests' => 113;
 
 use SGN::Test::WWW::WebDriver;
 use Selenium::Remote::WDKeys 'KEYS';
@@ -390,6 +390,17 @@ $t->while_logged_in_as("submitter", sub {
     ok($selected_reloaded_elements =~ /IITA-TMS-IBA011412/, "Verify first column wizard, selected elements, after merging $fourth_list_name and two new elements: accession IITA-TMS-IBA011412");
     ok($selected_reloaded_elements =~ /IITA-TMS-IBA30572/, "Verify first column wizard, selected elements, after merging $fourth_list_name and two new elements: accession IITA-TMS-IBA30572");
 
+    #  TEST WORKING MIXED MODEL AND DETAILS PAGE FOR DATASET 1
+    $t->get_ok('/search/datasets');
+    sleep(1);
+
+    $t->find_element_ok("//a[text()='$dataset_name_1']",'xpath','checking for created dataset on dataset overview page')->click();
+    sleep(5);
+
+    my $child_analyses = $t->find_element('dataset_analysis_usage', 'id')->get_text();
+    ok($child_analyses eq "(none)", 'checking initial analysis usage');
+    sleep(1);
+
     #  DELETE DATASET
     $t->get_ok('/breeders/search');
     sleep(3);