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fix executable for sra tasks too
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luizirber committed Jul 28, 2024
1 parent 3e3fc6c commit 0b961de
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1 change: 1 addition & 0 deletions wort/blueprints/compute/tasks.py
Original file line number Diff line number Diff line change
Expand Up @@ -47,6 +47,7 @@ def compute(sra_id):
f" -o {f.name} "
" - ",
shell=True, capture_output=True, check=True,
executable="/bin/bash",
)
except CalledProcessError as e:
if e.returncode == 3:
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