pep8 fixes

jwql/shared_tasks/run_pipeline.py

@@ -348,7 +348,7 @@ def run_save_jump(input_file, short_name, work_directory, instrument, ramp_fit=T
     outputs = args.outputs
     step_args = args.step_args
 
-    status_file = os.path.join(working_path, short_name+"_status.txt")
+    status_file = os.path.join(working_path, short_name + "_status.txt")
     with open(status_file, 'w') as out_file:
         out_file.write("Starting Process\n")
         out_file.write("\tpipeline is {} ({})\n".format(pipe_type, type(pipe_type)))

jwql/shared_tasks/shared_tasks.py

@@ -1,4 +1,4 @@
- #! /usr/bin/env python
+#! /usr/bin/env python
 
 """This module contains code for the celery application, which is used for any demanding
 work which should be restricted in terms of how many iterations are run simultaneously, or
@@ -204,7 +204,7 @@ def log_subprocess_output(pipe):
     If a subprocess STDOUT has been set to subprocess.PIPE, this function will log each
     line to the logging output.
     """
-    for line in iter(pipe.readline, b''): # b'\n'-separated lines
+    for line in iter(pipe.readline, b''):  # b'\n'-separated lines
         logging.info("\t{}".format(line.decode('UTF-8').strip()))
 
 
@@ -224,6 +224,7 @@ def after_setup_celery_logger(logger, **kwargs):
 def collect_after_task(**kwargs):
     gc.collect()
 
+
 def convert_step_args_to_string(args_dict):
     """Convert the nested dictionary containing pipeline step parameter keyword/value pairs
     to a string so that it can be passed via command line
@@ -239,17 +240,17 @@ def convert_step_args_to_string(args_dict):
     args_str : str
         String representation of ``args_dict``
     """
-    args_str="'{"
+    args_str = "'{"
 
     for i, step in enumerate(args_dict):
         args_str += f'"{step}":'
         args_str += '{'
         for j, (param, val) in enumerate(args_dict[step].items()):
             args_str += f'"{param}":"{val}"'
-            if j < len(args_dict[step])-1:
+            if j < len(args_dict[step]) - 1:
                 args_str += ', '
         args_str += "}"
-        if i < len(args_dict)-1:
+        if i < len(args_dict) - 1:
             args_str += ','
     args_str += "}'"
     return args_str
@@ -331,7 +332,7 @@ def run_calwebb_detector1(input_file_name, short_name, ext_or_exts, instrument,
     current_dir = os.path.dirname(__file__)
     cmd_name = os.path.join(current_dir, "run_pipeline.py")
     outputs = ",".join(ext_or_exts)
-    result_file = os.path.join(cal_dir, short_name+"_status.txt")
+    result_file = os.path.join(cal_dir, short_name + "_status.txt")
     if "all" in ext_or_exts:
         logging.info("All outputs requested")
         if instrument.lower() != 'miri':
@@ -399,7 +400,7 @@ def run_calwebb_detector1(input_file_name, short_name, ext_or_exts, instrument,
         set_permissions(os.path.join(output_dir, file))
 
     logging.info("Removing local files.")
-    files_to_remove = glob(os.path.join(cal_dir, short_name+"*"))
+    files_to_remove = glob(os.path.join(cal_dir, short_name + "*"))
     for file_name in files_to_remove:
         logging.info("\tRemoving {}".format(file_name))
         os.remove(file_name)
@@ -472,7 +473,7 @@ def calwebb_detector1_save_jump(input_file_name, instrument, ramp_fit=True, save
     output_dir = os.path.join(config["transfer_dir"], "outgoing")
 
     cmd_name = os.path.join(os.path.dirname(__file__), "run_pipeline.py")
-    result_file = os.path.join(cal_dir, short_name+"_status.txt")
+    result_file = os.path.join(cal_dir, short_name + "_status.txt")
 
     cores = 'all'
     status = run_subprocess(cmd_name, "jump", "all", cal_dir, instrument, input_file,
@@ -531,7 +532,7 @@ def calwebb_detector1_save_jump(input_file_name, instrument, ramp_fit=True, save
                 files["fitopt_output"] = os.path.join(output_dir, file)
 
     logging.info("Removing local files.")
-    files_to_remove = glob(os.path.join(cal_dir, short_name+"*"))
+    files_to_remove = glob(os.path.join(cal_dir, short_name + "*"))
     for file_name in files_to_remove:
         logging.info("\tRemoving {}".format(file_name))
         os.remove(file_name)