update failing duplication_checking #25
Workflow file for this run
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| ## This workflow performs PEP8 style checks on the python code in notebook code cells. | |
| name: PEP8 Notebook Style Check Execution | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - 'notebooks/**.ipynb' | |
| - '*.yml' | |
| jobs: | |
| gather-notebooks: | |
| # below logic will only allow workflow to trigger under specific conditions | |
| if: github.event.pull_request.state == 'open' | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| ## routine to gather only the changed notebook files and supply them to the matrix | |
| - name: changed-files | |
| id: get-changed-files | |
| uses: tj-actions/changed-files@v35 | |
| with: | |
| separator: "," | |
| files: | | |
| **/*.ipynb | |
| ## convert the list of files to an array and push them into the matrix as a json object | |
| - name: set-matrix | |
| id: set-matrix | |
| run: | | |
| IFS=',' read -r -a array <<< "${{steps.get-changed-files.outputs.all_changed_files}}" | |
| echo "{$array}" | |
| echo "matrix=$(jq --compact-output --null-input '$ARGS.positional' --args -- "${array[@]}")" >> $GITHUB_OUTPUT | |
| notebook-style-checks: | |
| needs: gather-notebooks | |
| environment: ci_env | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| notebooks: ${{ fromJson(needs.gather-notebooks.outputs.matrix) }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.8.12 | |
| uses: actions/setup-python@v4 ## needed for caching | |
| with: | |
| python-version: 3.8.12 | |
| cache: 'pip' | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install dependencies | |
| run: | | |
| pip install flake8 | |
| pip install numpy | |
| pip install pytz | |
| - name: Run PEP8 style check | |
| run: | | |
| python .github/helpers/pep8_nb_style_checker.py -f ${{ matrix.notebooks }} |