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Re upload preprocessed data after fresh preprocessing (#161)
* add updated labels softseg bin * add updated softseg labels * add preprocessed images * rm excluded participants * update with script and release tag
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| This folder contains the preprocessed images using [process_data.sh](https://github.com/spine-generic/spine-generic/blob/v2.7/process_data.sh). The preprocessing steps include: | ||
|
|
||
| T2w: | ||
| * Resampling to 0.8x0.8x0.8 mm | ||
| * Reorientation to RPI | ||
| T1w: | ||
| * Resampling to 1x1x1 mm | ||
| * Reorientation to RPI | ||
| T2star: | ||
| * Reorientation to RPI | ||
| * Root-mean square across 4th dimension (if exists) | ||
|
|
||
| MTS (flip-1_mt-on & flip-2_mt-off): | ||
| * Reorientation to RPI | ||
|
|
||
| DWI: | ||
| * Motion correction | ||
| * Avreage across 4th dimension |
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derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS.nii.gz
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| /annex/objects/SHA256E-s1174064--72cdb319a156a5e816939ed61db2011c78430551d6e755dd36008b0eccb0e24f.nii.gz | ||
| /annex/objects/SHA256E-s1174002--9aa6ec79a78cdfa40d54e8ff8ac2d55629d5c5023c0f918e3fb626ce74ea3c3d.nii.gz |
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derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS.nii.gz
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| /annex/objects/SHA256E-s1229579--ac8f15be7973fffe0cc98fe21ce32d6d3b7665957ef009067c65ccc683f3523d.nii.gz | ||
| /annex/objects/SHA256E-s1229554--48c6bd34de552527ad6bc57d911585113a995f1edb07d33d0d5ec0dd77736e5c.nii.gz |
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| /annex/objects/SHA256E-s23710728--8bbf45c2ec80ae402524b6387812691b9fda1a63c252e87bcb1a5f82ab48834a.nii.gz | ||
| /annex/objects/SHA256E-s23710700--66c80142b561cbc866085afe62d39f37e1af8496fc2afba105e686d7083da4f4.nii.gz |
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| /annex/objects/SHA256E-s4960583--db316618b4f12f1aff280cfad77e282511c8302eb1c9cb063167df2ba9003654.nii.gz | ||
| /annex/objects/SHA256E-s4960516--375a95497f05f233b094c89082aeb51086786aba690238e97d6f9fb00e7a9e8b.nii.gz |
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| /annex/objects/SHA256E-s8880646--408092001006f59c808a5bc2f835f0d3eab64e035325cfd3013c6560458fe66a.nii.gz | ||
| /annex/objects/SHA256E-s8880618--c0789954a1212e7c58299356ec4f06bdf09188f44c7f9df4ce4c68f05b12b3f1.nii.gz |
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| /annex/objects/SHA256E-s1039743--8c3bd2d0d33d183ef63bdcee8d3050fb5f5adf920bad364857ea9c8d09b8d7a3.nii.gz |
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| /annex/objects/SHA256E-s1337099--51119d8115fc7ec2d3a958592a2e5c3a9c6ec7423c17d1bb46c749781abf9fa1.nii.gz | ||
| /annex/objects/SHA256E-s1337068--eac696760fdca682033c43ef291c0fd881fa35dc4b6c1508744b3eab8c8759dd.nii.gz |
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| /annex/objects/SHA256E-s1387325--46b8534be1d68028259a3283239fce1145239190cb1ec4d46949c06bedcc4fa7.nii.gz |
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| /annex/objects/SHA256E-s4744451--fd246720b3f12da994fda09bfdfda87a228f08605bba8ee4aa4080497cfc31e5.nii.gz |
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| /annex/objects/SHA256E-s9260154--7075fc58f83639dc1a179552b19439f06c4f358dd4393bf3ed8d9025f4cea1f3.nii.gz | ||
| /annex/objects/SHA256E-s9260126--62e89648fffcefa185ea9b88e5a2456023cb3b6154278c5e619d9401f4be6ceb.nii.gz |
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| /annex/objects/SHA256E-s1040574--6ce9bf9ed622ded45f164d9dfa2ee4489387c672dbfc4c722e4e7cfe8226b0b4.nii.gz |
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derivatives/data_preprocessed/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS.nii.gz
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| /annex/objects/SHA256E-s1370365--03e94cb3692bd48711e3532871beb0f7707e43e6fe8b16cf5dd4b80837cf421a.nii.gz | ||
| /annex/objects/SHA256E-s1370334--87e4c21de359e30ce26399a87c39346f9f8606fb05891837a702481db3019ab2.nii.gz |
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derivatives/data_preprocessed/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS.nii.gz
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| /annex/objects/SHA256E-s1401634--6f76bd47225830caa739dca3640c025006530e9981c565dabd5c4f699ec7c5e4.nii.gz | ||
| /annex/objects/SHA256E-s1401602--fdd4a06167ae7308be9a08af92e630919007cd3d57348a6eeac9818ee3e6ac86.nii.gz |
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| /annex/objects/SHA256E-s45866481--67c7b2169c212fb14f53166cd4e1b04f79c9a4d6211598c712bbd72d08aac425.nii.gz | ||
| /annex/objects/SHA256E-s45866453--0952b3c70504c10971991c22c7abd156dd02798e83e6f3a41a9ea3e8a502d821.nii.gz |
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| /annex/objects/SHA256E-s5000511--f6629bb56a7f23c7e061f42bca994372705695bc51aa2ef6619bad7407a7d7a0.nii.gz |
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| /annex/objects/SHA256E-s12582020--4d3d36255ad86058b1fdc140ce5d9b0eea2300c763c0e8d1d90ca3ea8b5bcfbc.nii.gz |
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| /annex/objects/SHA256E-s1172291--3a6c314173c43460b2c0db72b655b423167d29b2e0b1282dbe347e6d93bfbd15.nii.gz |
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derivatives/data_preprocessed/sub-balgrist06/anat/sub-balgrist06_space-other_T2star.nii.gz
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derivatives/data_preprocessed/sub-balgrist06/anat/sub-balgrist06_space-other_T2w.nii.gz
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2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi.nii.gz
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2 changes: 1 addition & 1 deletion
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...ata_preprocessed/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS.nii.gz
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2 changes: 1 addition & 1 deletion
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2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-barcelona01/anat/sub-barcelona01_space-other_T1w.nii.gz
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| /annex/objects/SHA256E-s23722456--0687b8a4736af0b50cde24a63ee0059331210cccdea6ba08848cca1ddb008a12.nii.gz | ||
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2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-barcelona01/anat/sub-barcelona01_space-other_T2star.nii.gz
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| /annex/objects/SHA256E-s4213364--cd7813a7b75e3918834622bb8a4633b22709bcb0763f8bef5c86e4279ded830f.nii.gz |
2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-barcelona01/anat/sub-barcelona01_space-other_T2w.nii.gz
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2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi.nii.gz
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2 changes: 1 addition & 1 deletion
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...ata_preprocessed/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS.nii.gz
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| /annex/objects/SHA256E-s1960566--8d2b6fbba1ac113645de1d28bd088e817f56cec9f898d8374aa9ccf04daa498f.nii.gz |
2 changes: 1 addition & 1 deletion
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| /annex/objects/SHA256E-s1950666--4d830fa418bfbbd39ec491fcd94b8837137167a43a823a614a7b48457af75690.nii.gz |
2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-barcelona02/anat/sub-barcelona02_space-other_T1w.nii.gz
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| /annex/objects/SHA256E-s25011216--eaa40ff4954988784e27c55eb5039eef3dab2a043376c1c84ced439fb810fae6.nii.gz | ||
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2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-barcelona02/anat/sub-barcelona02_space-other_T2star.nii.gz
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2 changes: 1 addition & 1 deletion
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derivatives/data_preprocessed/sub-barcelona02/anat/sub-barcelona02_space-other_T2w.nii.gz
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| /annex/objects/SHA256E-s12194813--4a59eefa9a2bf5398337572cc16e404f2f711f7edce12414fa58797f44611b3e.nii.gz |
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derivatives/data_preprocessed/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi.nii.gz
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| /annex/objects/SHA256E-s387220--da035df70d27dbd8ed4575fe4a511071ddfb462bd023b4149b983ed1918a8813.nii.gz |
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...ata_preprocessed/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS.nii.gz
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derivatives/data_preprocessed/sub-barcelona03/anat/sub-barcelona03_space-other_T1w.nii.gz
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derivatives/data_preprocessed/sub-barcelona03/anat/sub-barcelona03_space-other_T2star.nii.gz
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derivatives/data_preprocessed/sub-barcelona03/anat/sub-barcelona03_space-other_T2w.nii.gz
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derivatives/data_preprocessed/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi.nii.gz
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| /annex/objects/SHA256E-s3979172--bfa5360f81a843cbda1c80110db75eca1645ec087be5e449aa6fd0812c867c7b.nii.gz | ||
| /annex/objects/SHA256E-s3979102--35624c48358ce5681c24acaead1c24c6e4b676160a069a01581fcf8c98494d43.nii.gz |
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