A set of command-line tools for converting between neuroimaging data formats, using the ITK library for Input/Output, with useful features like writing out diffusion b-value files. Currently supports Bruker 2dseq and limited DICOM (GE flavor).
If you find the tools useful the author would love to hear from you.
Credit / Blame / Contact - Tobias Wood - [email protected]
This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
MacOS and Linux binaries are available from
http://github.com/spinicist/nanconvert/releases in .tar.gz format. Unpack the
archives using tar -xzf nanconvert-platform.tar.gz and move the contained
files to somewhere on $PATH.
The executable nanconvert_bruker can be called to process a single Bruker
2dseq file. Specify the path to the 2dseq file itself, not the folder it resides
in. Type nanconvert_bruker -h to see a full list of options.
In addition, the script nanbruker is provided which can convert multiple
ParaVision datasets. Type nanbruker to see a full list of options. If
nanbruker -q is called, then individual 2dseq files will be converted using
jobs submitted to a Sun Grid Engine queue.