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Phosphorylation

Encoding Rule

onehot21

encode 20 kinds of amino acid and pad symbol to onehot vector. X symbol encode to 0.05 for first 20 position, 0 for 21 position.

onehot22

encode 20 kinds of amino acid, pad, X symbol to onehot vector.

onehot21-nox

encode 20 kinds of amino acid, pad symbol to onehot vector. ignore X symbol.

onehot21-nopad

encode 20 kinds of amino acid, X symbol to onehot vector. ignore pad symbol.

Network

nobn

disable all batch normalization

validcnn

set padding = 'VALID' to all conv2d

errorconv

for first convolution layer, use 1x21 size filter, 1x22 stride and onehot22 encoding

Train

python3 train.py [Encoding Rule]

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