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Improve Numerical Stability of Bernoulli CDF functions #3482

Improve Numerical Stability of Bernoulli CDF functions

Improve Numerical Stability of Bernoulli CDF functions #3482

Workflow file for this run

name: Windows Rtools40
on:
pull_request:
branches: [ develop, master ]
push:
branches: [ develop ]
paths-ignore:
- 'doygen/**'
- 'hooks/**'
- 'licenses/**'
- 'LICENSE.md'
- 'README.md'
- 'RELEASE-NOTES.txt'
permissions:
contents: read
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
jobs:
prim-rev:
name: prim and rev tests
runs-on: windows-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.x'
- uses: r-lib/actions/setup-r@v2
with:
r-version: 4.1.3
- name: Set path for Rtools40
if: runner.os == 'Windows'
run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Install mingw32-make and check toolchain path
if: runner.os == 'Windows'
run: |
pacman -Syu mingw-w64-x86_64-make --noconfirm
g++ --version
Get-Command g++ | Select-Object -ExpandProperty Definition
mingw32-make --version
Get-Command mingw32-make | Select-Object -ExpandProperty Definition
shell: powershell
- name: Build Math libs
shell: powershell
run: |
Add-Content make\local "O=1`n"
mingw32-make -f make/standalone math-libs -j2
- name: Add TBB to PATH
shell: powershell
run: echo "D:/a/math/math/lib/tbb" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Run prim and rev unit tests
shell: powershell
run: |
python.exe runTests.py -j2 test/unit/*_test.cpp
python.exe runTests.py -j2 test/unit/math/*_test.cpp
python.exe runTests.py -j2 test/unit/math/prim
python.exe runTests.py -j2 test/unit/math/rev
python.exe runTests.py -j2 test/unit/math/memory
- name: Upload gtest_output xml
uses: actions/upload-artifact@v3
if: failure()
with:
name: gtest_outputs_xml
path: '**/*_test.xml'
fwd-non-fun-mix:
name: fwd tests and non-fun mix tests
runs-on: windows-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.x'
- uses: r-lib/actions/setup-r@v2
with:
r-version: 4.1.3
- name: Set path for Rtools40
if: runner.os == 'Windows'
run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Install mingw32-make and check toolchain path
if: runner.os == 'Windows'
run: |
pacman -Syu mingw-w64-x86_64-make --noconfirm
g++ --version
Get-Command g++ | Select-Object -ExpandProperty Definition
mingw32-make --version
Get-Command mingw32-make | Select-Object -ExpandProperty Definition
shell: powershell
- name: Build Math libs
shell: powershell
run: |
Add-Content make\local "O=1`n"
mingw32-make -f make/standalone math-libs -j2
- name: Add TBB to PATH
shell: powershell
run: echo "D:/a/math/math/lib/tbb" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Disable running fwd/mix tests
shell: powershell
run: echo "CXXFLAGS+= -DSTAN_MATH_TESTS_REV_ONLY" | Out-File -Append -FilePath make/local -Encoding utf8
- name: Run fwd unit tests and all the mix tests except those in mix/fun
shell: powershell
run: |
python.exe runTests.py test/unit/math/fwd -j2
python.exe runTests.py test/unit/math/mix/core -j2
python.exe runTests.py test/unit/math/mix/functor -j2
python.exe runTests.py test/unit/math/mix/meta -j2
python.exe runTests.py test/unit/math/mix/prob -j2
python.exe runTests.py test/unit/math/mix/*_test.cpp -j2
- name: Upload gtest_output xml
uses: actions/upload-artifact@v3
if: failure()
with:
name: gtest_outputs_xml
path: '**/*_test.xml'
mix-fun-1:
name: mix/fun tests 1
runs-on: windows-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.x'
- uses: r-lib/actions/setup-r@v2
with:
r-version: 4.1.3
- name: Set path for Rtools40
if: runner.os == 'Windows'
run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Install mingw32-make and check toolchain path
if: runner.os == 'Windows'
run: |
pacman -Syu mingw-w64-x86_64-make --noconfirm
g++ --version
Get-Command g++ | Select-Object -ExpandProperty Definition
mingw32-make --version
Get-Command mingw32-make | Select-Object -ExpandProperty Definition
shell: powershell
- name: Build Math libs
shell: powershell
run: |
Add-Content make\local "O=1`n"
mingw32-make -f make/standalone math-libs -j2
- name: Add TBB to PATH
shell: powershell
run: echo "D:/a/math/math/lib/tbb" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Run mix/fun unit tests
shell: powershell
run: |
$MixFunTests = Get-ChildItem -Path test\unit\math\mix\fun\* -Include *.cpp | Resolve-Path -Relative
$NumberTests = $MixFunTests.Length
$HalfNumberTests = [math]::Floor($NumberTests / 2)
python.exe runTests.py $MixFunTests[0..$HalfNumberTests]
- name: Upload gtest_output xml
uses: actions/upload-artifact@v3
if: failure()
with:
name: gtest_outputs_xml
path: '**/*_test.xml'
mix-fun-2:
name: mix/fun tests 2
runs-on: windows-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.x'
- uses: r-lib/actions/setup-r@v2
with:
r-version: 4.1.3
- name: Set path for Rtools40
if: runner.os == 'Windows'
run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Install mingw32-make and check toolchain path
if: runner.os == 'Windows'
run: |
pacman -Syu mingw-w64-x86_64-make --noconfirm
g++ --version
Get-Command g++ | Select-Object -ExpandProperty Definition
mingw32-make --version
Get-Command mingw32-make | Select-Object -ExpandProperty Definition
shell: powershell
- name: Build Math libs
shell: powershell
run: |
Add-Content make\local "O=1`n"
mingw32-make -f make/standalone math-libs -j2
- name: Add TBB to PATH
shell: powershell
run: echo "D:/a/math/math/lib/tbb" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
- name: Run mix/fun unit tests
shell: powershell
run: |
$MixFunTests = Get-ChildItem -Path test\unit\math\mix\fun\* -Include *.cpp | Resolve-Path -Relative
$NumberTests = $MixFunTests.Length
$HalfNumberTests = [math]::Floor($NumberTests / 2)
python.exe runTests.py $MixFunTests[($HalfNumberTests + 1)..($NumberTests - 1)]
- name: Upload gtest_output xml
uses: actions/upload-artifact@v3
if: failure()
with:
name: gtest_outputs_xml
path: '**/*_test.xml'