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RotaABM

WARNING: This repository is currently under development and is NOT ready for use!

This repository contains code for the rotavirus genetic diversity project.

Installation

pip install -r requirements.txt

This does not install the code as an importable module; just run rotaABM.py for that (see below).

Running the code

Call python rotaABM.py which writes results to the results folder. File names are set based on parameter values. Run plot_results.py to plot key results.

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Rotasim: Rotavirus Simulator

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  • Python 98.9%
  • R 1.1%