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@statbiophys

Statistical Biophysics Consortium

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  1. OLGA OLGA Public

    Compute generation probabilities of CDR3 amino acid and nucleotide sequences

    Python 51 18

  2. SONIA SONIA Public

    Infer selection pressures on features of amino acid CDR3 sequences.

    Python 24 7

  3. HLAGuessr HLAGuessr Public

    Jupyter Notebook 17 3

  4. soNNia soNNia Public

    Python 14 4

  5. pygor3 pygor3 Public

    pygor3 repository

    Jupyter Notebook 9 4

  6. NoisET NoisET Public

    NoisET is an easy-to-use python package that implements and generalizes a previously developed Bayesian method in [Puelma Touzel et al, 2020] ). It can be used to learn experimental noise models fo…

    Jupyter Notebook 8 2

Repositories

Showing 10 of 36 repositories
  • HILARy Public

    Python package for inference of lineages in antibody repertoires

    Jupyter Notebook 6 GPL-3.0 3 0 1 Updated Apr 16, 2025
  • soNNia Public
    Python 14 GPL-3.0 4 2 1 Updated Apr 8, 2025
  • HLAGuessr Public
    Jupyter Notebook 17 GPL-3.0 3 2 0 Updated Jan 21, 2025
  • ABGen Public

    Code for the Paper: Generative Model for Monoclonal Antibodies

    Python 2 1 0 0 Updated Nov 25, 2024
  • social_mice Public

    Python and MATLAB code and data for statistical physics analysis of social behavior in Eco-HAB mice.

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 22, 2024
  • ATrieGC Public

    A python/c++ module to store large amount of sequences and look at hamming distance clustering

    C++ 1 GPL-3.0 1 0 0 Updated Sep 7, 2024
  • pygor3 Public

    pygor3 repository

    Jupyter Notebook 9 4 5 3 Updated Jul 14, 2024
  • SONIA Public

    Infer selection pressures on features of amino acid CDR3 sequences.

    Python 24 GPL-3.0 7 1 1 Updated Apr 17, 2024
  • tools Public

    Repository where useful tools can be reused by others in the group

    0 0 0 0 Updated Apr 8, 2024
  • catede Public Forked from camacesco/catede

    Tools for information theoretic measures estimation.

    Python 2 1 0 0 Updated Feb 13, 2024

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