The pFUnit submodule has been updated to be compatible with python 3.… #1440
Workflow file for this run
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| # Run these tests automatically on Github | |
| # on every push. | |
| name: StellaTests | |
| on: [push] | |
| # We run the in a bash shell | |
| defaults: | |
| run: | |
| shell: bash | |
| # Define the tests, for now we only have <standard_tests> | |
| # where we define 3 seperate workflows in matrix/config/name | |
| # For each of these workflows we need to perform the same | |
| # initial steps: <Install dependencies>, <System information> | |
| # Next, only the step corresponding to the test will be executed. | |
| jobs: | |
| # Build stella with Make in debug mode, here the python tests do not work! | |
| # Specifically, the flush statement in mini_libstell's | |
| # read_wout_mod.F module in the readw_and_open() routine breaks | |
| # when reading a VMEC equilibirium during the python tests. | |
| test1: | |
| runs-on: ubuntu-latest | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: "Make stella in debug mode" | |
| steps: | |
| - name: Install dependencies | |
| run: sudo apt update && | |
| sudo apt install -y | |
| gfortran | |
| make | |
| libfftw3-dev | |
| libnetcdf-dev | |
| libnetcdff-dev | |
| netcdf-bin | |
| python3 | |
| python3-pip | |
| openmpi-bin | |
| libopenmpi-dev | |
| - name: System information | |
| run: | | |
| cat /etc/*release | |
| gfortran --version | |
| nf-config --all | |
| - uses: actions/checkout@v2 | |
| - name: Build stella in debug mode | |
| run: | | |
| set -ex | |
| export GK_SYSTEM=gnu_ubuntu_debug | |
| make -I Makefiles -j4 | |
| # Build stella with Make and run automatic fortran tests | |
| test2: | |
| runs-on: ubuntu-latest | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: "Perform fortran tests of the stella code" | |
| steps: | |
| - name: Install dependencies | |
| run: sudo apt update && | |
| sudo apt install -y | |
| gfortran | |
| make | |
| libfftw3-dev | |
| libnetcdf-dev | |
| libnetcdff-dev | |
| netcdf-bin | |
| python3 | |
| python3-pip | |
| openmpi-bin | |
| libopenmpi-dev | |
| - name: System information | |
| run: | | |
| cat /etc/*release | |
| gfortran --version | |
| nf-config --all | |
| - uses: actions/checkout@v2 | |
| - name: Build stella | |
| run: | | |
| set -ex | |
| export GK_SYSTEM=gnu_ubuntu | |
| make -I Makefiles -j4 | |
| - name: Perform automated Fortran tests | |
| run: | | |
| set -ex | |
| export GK_SYSTEM=gnu_ubuntu | |
| make -I Makefiles -j4 build-pfunit-library | |
| make -I Makefiles -j4 run-automated-fortran-tests | |
| # Build stella with CMake and run automatic Fortran tests | |
| # Cmake has to run on 1 node or it will run into parallelisation errors | |
| test3: | |
| runs-on: ubuntu-latest | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: "CMake stella" | |
| steps: | |
| - name: Install dependencies | |
| run: sudo apt update && | |
| sudo apt install -y | |
| gfortran | |
| make | |
| libfftw3-dev | |
| libnetcdf-dev | |
| libnetcdff-dev | |
| netcdf-bin | |
| python3 | |
| python3-pip | |
| openmpi-bin | |
| libopenmpi-dev | |
| - name: System information | |
| run: | | |
| cat /etc/*release | |
| gfortran --version | |
| nf-config --all | |
| - uses: actions/checkout@v2 | |
| - name: Build stella (CMake) | |
| run: | | |
| set -ex | |
| cmake . -B build -DSTELLA_ENABLE_TESTS=on | |
| cmake --build build -j1 --target check | |
| # Build stella with Make and run automatic python tests | |
| test4: | |
| runs-on: ubuntu-latest | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: "Run stella and check the outputs numerically" | |
| steps: | |
| - name: Install dependencies | |
| run: sudo apt update && | |
| sudo apt install -y | |
| gfortran | |
| make | |
| libfftw3-dev | |
| libnetcdf-dev | |
| libnetcdff-dev | |
| netcdf-bin | |
| python3 | |
| python3-pip | |
| openmpi-bin | |
| libopenmpi-dev | |
| - name: System information | |
| run: | | |
| cat /etc/*release | |
| gfortran --version | |
| nf-config --all | |
| - uses: actions/checkout@v2 | |
| - name: Install automated stella test dependencies | |
| run: pip3 install --user -r tests/requirements.txt | |
| - name: Build stella | |
| run: | | |
| set -ex | |
| export GK_SYSTEM=gnu_ubuntu | |
| make -I Makefiles -j4 | |
| - name: Perform numerical tests for stella with Python | |
| run: | | |
| set -ex | |
| export GK_SYSTEM=gnu_ubuntu | |
| make -I Makefiles run-automated-numerical-tests-for-stella | |
| # Build stella with Make and run automatic python tests | |
| test5: | |
| runs-on: macos-latest | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| GK_SYSTEM: macosx | |
| FFTW_LIB_DIR: /opt/homebrew/lib/ | |
| FFTW_INC_DIR: /opt/homebrew/include/ | |
| NETCDF_LIB_DIR: /opt/homebrew/lib/ | |
| NETCDF_INC_DIR: /opt/homebrew/include/ | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: "Run stella and check the outputs numerically" | |
| steps: | |
| - name: Install Homebrew | |
| run: | | |
| /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)" | |
| - name: Install dependencies | |
| run: | | |
| brew update | |
| brew install gcc fftw netcdf netcdf-fortran open-mpi python | |
| ln -sn /opt/homebrew/bin/gfortran-12 /opt/homebrew/bin/gfortran | |
| - uses: actions/checkout@v2 | |
| - name: Build stella | |
| run: | | |
| set -ex | |
| make -I Makefiles -j4 | |
| - name: Perform numerical tests for stella with Python | |
| run: | | |
| set -ex | |
| python3 -m venv venv | |
| source venv/bin/activate | |
| pip install --upgrade pip | |
| pip install netCDF4 numpy pytest importlib_metadata xarray setuptools | |
| make -I Makefiles run-automated-numerical-tests-for-stella |